GATK
From MaRDI portal
Cited in
(76)- BioWorkbench
- STAR
- Variance in estimated pairwise genetic distance under high versus low coverage sequencing: the contribution of linkage disequilibrium
- adephylo
- BM-map
- TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
- An external-memory algorithm for string graph construction
- BlueSNP
- Biodoop
- Expresso
- MICAlign
- PeakRanger
- CloudBLAST
- SOAP3
- MrsRF
- SeqWare
- Hadoop-BAM
- Eoulsan
- FX
- Seal
- CloudBurst
- CloudAligner
- An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data
- Samtools
- Estimating Latent Cell Subpopulations with Bayesian Feature Allocation Models
- Empirical Bayes scan statistics for detecting clusters of disease risk variants in genetic studies
- FastQC
- FASTX
- Trimmomatic
- Meta-IDBA
- ABySS
- ReadDepth
- Jnomics
- BFAST
- Error correction in methylation profiling from NGS bisulfite protocols
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- BEETL
- Bismark
- PurBayes
- PurityEst
- PhyloWGS
- THetA
- PyClone
- VarScan
- Swift
- HISAT
- Bowtie 2
- mrsFAST
- SciClone
- TreeClone
- PairClone
- BayClone2
- Salmon
- GASSST
- Crossbow
- BWA
- momi2
- PoMo
- fastsimcoal
- vipR
- MethylCoder
- An overview of multiple sequence alignments and cloud computing in bioinformatics
- Efficiently inferring the demographic history of many populations with allele count data
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- SomaticSignatures
- HitWalker
- Jannovar
- SNVer
- HTQC
- BCFtools
- ExomeWalker
- A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data
- Computational exome and genome analysis
- Detecting mutations in mixed sample sequencing data using empirical Bayes
- A Bayesian feature allocation model for tumor heterogeneity
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