Bowtie 2
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Mason
- SPARSE
- Taxator-tk
- Vargas
- AStarix
- hybridSPAdes
- Asgan
- intePareto
- Graph algorithms for DNA sequencing -- origins, current models and the future
- G-MAPSEQ -- a new method for mapping reads to a reference genome
- FM-index of alignment with gaps
- A novel specialized single-linkage clustering algorithm for taxonomically ordered data
- RankAggreg
- Soap
- Fast and optimal sequence-to-graph alignment guided by seeds
- AUGUSTUS
- A resource-frugal probabilistic dictionary and applications in bioinformatics
- Refining the \(r\)-index
- Modeling association in microbial communities with clique loglinear models
- Global and local sequence alignment with a bounded number of gaps
- GapsMis
- SOAP3
- GATK
- CLUSTAL
- BMSS
- Approximate search of short patterns with high error rates using the 01^ 0 lossless seeds
- Samtools
- FastQC
- SOAPdenovo
- FASTX
- Trimmomatic
- QUAST
- RSeQC
- SHRiMP
- EMIRGE
- BSgenome
- Gviz
- Meta-IDBA
- CUDASW++
- Cogent
- TFBSTools
- SeqAn
- BFAST
- PatternHunter
- Error correction in methylation profiling from NGS bisulfite protocols
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- String-matching and alignment algorithms for finding motifs in NGS data
- An efficient approach to merging paired-end reads and incorporation of uncertainties
- sva
- ALFRED
- PuFFIN
- G-MAPSEQ
- G-MSA
- G-DNA
- Musket
- RazerS
- modENCODE
- FlyBase
- HIVE-hexagon
- BS Seeker
- Bismark
- BSMAP
- libgapmis
- gage
- Tabix
- Starcode
- HISAT
- systemPipeR
- QuasR
- ChromHMM
- GenomicRanges
- Knuth Morris Pratt
- mrsFAST
- vg
- deBGA
- MultiQC
- PALMapper
- Salmon
- AutoCorres
- DYNAMIC
- dbwt
- get-git-revisions
- LZ77
- Yanagi
- RapMap
- Vaquita
- LUMPY
- ThIEF
- GATB
- DGW
- MONKEY
- MetaSV
- svclassify
- Delly
- Pindel
- iTOL
- PBSIM
- GASV
- CUSHAW
This page was built for software: Bowtie 2
