HISAT
From MaRDI portal
Cited in
(72)- Mason
- AStarix
- MultiTrans
- Scallop2
- StringTie
- RefShannon
- CIDANE
- MFD-ILP
- hybridSPAdes
- intePareto
- STAR
- ARSyN
- Linear time construction of indexable elastic founder graphs
- Fast, flexible, and exact minimum flow decompositions via ILP
- GATK
- Samtools
- FastQC
- Trimmomatic
- sva
- gage
- Tabix
- systemPipeR
- clusterProfiler
- QuasR
- GenomicRanges
- Bowtie 2
- SNVMix
- vg
- deBGA
- SplitMEM
- Wileup
- topGO
- ReQON
- MultiQC
- PALMapper
- SomaticSniper
- ZOOM
- Salmon
- Strelka
- eSNV-detect
- MapSplice
- HaploReg
- RNASeqReadSimulator
- LoRDEC
- CLIIQ
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- Indexing variation graphs
- BiocManager
- compGenomRData
- genomation
- ODIN
- gmapR
- normr
- deFuse
- GISTIC2.0
- Rbowtie
- Trim Galore
- rGADEM
- rGREAT
- MethylSeekR
- BiSeq
- SPUMONI
- Eulertigs
- SSP
- pufferfish2
- BrownieAligner
- PuffAligner
- MONI
- ShoRAH
- IsoLasso
- Graphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH fails
This page was built for software: HISAT
