PatternHunter
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Design and analysis of periodic multiple seeds
- Better spaced seeds using quadratic residues
- Sensitivity analysis and efficient method for identifying optimal spaced seeds
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- Minimal auxiliary Markov chains through sequential elimination of states
- Faster exact distributions of pattern statistics through sequential elimination of states
- Hardness of optimal spaced seed design
- Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design
- Data mining in bioinformatics
- Distributions of pattern statistics in sparse Markov models
- Graph connectivity, partial words, and a theorem of Fine and Wilf
- Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
- On spaced seeds for similarity search
- Masking patterns in sequences: A new class of motif discovery with don't cares
- An efficient similarity search based on indexing in large DNA databases
- Regexpcount
- BioJava
- PHENIX
- GOSim
- Soap
- Spectronet
- HMMER
- SPatt
- LAGAN
- T-coffee
- Samtools
- FASTA3
- PRALINE
- BLAT
- AVID
- SHRiMP
- MUMMER
- PipMaker
- JBROWSE
- Meta-IDBA
- rBiopaxParser
- YACOP
- SSAHA
- AWTY
- Consed
- SeqAn
- BFAST
- STRAP
- TreeBASE
- AMoRe
- AceView
- Coot
- CLAP
- CATH
- BLASTZ
- BRIG
- Cgaln
- CINEMA
- CGView
- BioStar
- BMGE
- GFF-Ex
- Conrad
- CONTRAST
- Dotlet
- CLANN
- CRITICA
- EVEREST
- Ensembl REST
- FunTree
- FRESCO
- Gene3D
- FlyBase
- HAMAP
- ExaBayes
- kClust
- RazerS
- GtRNAdb
- GeneMarkS
- GOLD
- Jalview
- HIVE-hexagon
- MOLREP
- JDotter
- Hetero
- M-GCAT
- jModelTest
- MATCH
- MEME-LaB
- LDDist
- ModuleMaster
- mGene
- MOCAT
- OrthoDB
- RamiGO
- NextGenMap
- PIRSF
- PHYLO_WIN
- piRNABank
- piRBase
- piRNAQuest
- PhyloBayes 3
- PhyloBayes MPI
- ProtTest 3
- SEAVIEW
This page was built for software: PatternHunter
