PatternHunter
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Lossless filter for multiple repetitions with Hamming distance
- Regexpcount
- Metagenomic reads binning with spaced seeds
- BioJava
- On spaced seeds for similarity search
- Sensitivity analysis and efficient method for identifying optimal spaced seeds
- PHENIX
- GOSim
- Spectronet
- Soap
- HMMER
- SPatt
- An efficient similarity search based on indexing in large DNA databases
- Compressed spaced suffix arrays
- Indexing factors with gaps
- Faster exact distributions of pattern statistics through sequential elimination of states
- GAME: A simple and efficient whole genome alignment method using maximal exact match filtering
- LAGAN
- T-coffee
- Approximate search of short patterns with high error rates using the 01^ 0 lossless seeds
- On the complexity of the spaced seeds
- Optimal spaced seeds for faster approximate string matching
- Samtools
- FASTA3
- PRALINE
- BLAT
- AVID
- SHRiMP
- YACOP
- MUMMER
- PipMaker
- SSAHA
- Meta-IDBA
- JBROWSE
- rBiopaxParser
- Designing efficient spaced seeds for SOLiD read mapping
- AWTY
- Consed
- Algorithms in computational molecular biology. Techniques approaches and applications.
- SeqAn
- STRAP
- BFAST
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- TreeBASE
- RazerS
- STRait Razor
- AMoRe
- MOLREP
- Coot
- GFF-Ex
- RamiGO
- kClust
- CLAP
- EVEREST
- CATH
- HAMAP
- PIRSF
- OrthoDB
- FunTree
- Gene3D
- Jalview
- SEAVIEW
- PHYLO_WIN
- CINEMA
- Cgaln
- FRESCO
- BRIG
- YASS
- CGView
- Dotlet
- JDotter
- BLASTZ
- M-GCAT
- AceView
- GtRNAdb
- FlyBase
- Savant Genome Browser
- MEME-LaB
- piRNABank
- piRBase
- piRNAQuest
- ModuleMaster
- MATCH
- Stampy
- NextGenMap
- HIVE-hexagon
- UCSC genome browser
- Ensembl REST
- BioStar
- TICO
- CRITICA
- GeneMarkS
- ZCURVE
- MOCAT
- GOLD
- Conrad
- CONTRAST
- mGene
- REGANOR
This page was built for software: PatternHunter
