PatternHunter
From MaRDI portal
swMATH20963MaRDI QIDQ32776FDOQ32776
Author name not available (Why is that?)
Official website: https://www.ncbi.nlm.nih.gov/pubmed/11934743
Cited In (only showing first 100 items - show all)
- Sensitivity analysis and efficient method for identifying optimal spaced seeds
- Design and analysis of periodic multiple seeds
- Better spaced seeds using quadratic residues
- Minimal auxiliary Markov chains through sequential elimination of states
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- Faster exact distributions of pattern statistics through sequential elimination of states
- Hardness of optimal spaced seed design
- Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design
- Data mining in bioinformatics
- Distributions of pattern statistics in sparse Markov models
- Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
- Graph connectivity, partial words, and a theorem of Fine and Wilf
- On spaced seeds for similarity search
- Masking patterns in sequences: A new class of motif discovery with don't cares
- An efficient similarity search based on indexing in large DNA databases
- Designing efficient spaced seeds for SOLiD read mapping
- On the complexity of the spaced seeds
- Optimal spaced seeds for faster approximate string matching
- Fast spaced seed hashing
- Combinatorics on partial word correlations
- MetaSim
- PASS
- ONE
- Bowtie 2
- REPuter
- ZOOM
- BatMeth
- BWA
- CAP-miRSeq
- CUSHAW
- GASSST
- MAP-RSeq
- Pash
- PSAR-Align
- Socrates
- MetaCluster
- Iedera
- MPSCAN
- PerM
- GAME: A simple and efficient whole genome alignment method using maximal exact match filtering
- DNACompress
- DiagHunter
- KnotSeeker
- JProGO
- PhyNav
- Arbor3D
- RadCon
- tYNA
- TreeDT
- Warmr
- Compressed spaced suffix arrays
- Indexing factors with gaps
- Algorithms in computational molecular biology. Techniques approaches and applications.
- An Experimental Study of Compressed Indexing and Local Alignments of DNA
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Lossless filter for multiple repetitions with Hamming distance
- BioJava
- PHENIX
- GOSim
- Soap
- Spectronet
- HMMER
- SPatt
- LAGAN
- T-coffee
- Samtools
- FASTA3
- PRALINE
- BLAT
- AVID
- SHRiMP
- MUMMER
- PipMaker
- JBROWSE
- Meta-IDBA
- rBiopaxParser
- YACOP
- SSAHA
- AWTY
- Consed
- SeqAn
- BFAST
- STRAP
- TreeBASE
- AMoRe
- AceView
- Coot
- CLAP
- CATH
- BLASTZ
- BRIG
- Cgaln
- CINEMA
- CGView
- BioStar
- BMGE
- GFF-Ex
- Conrad
- CONTRAST
- Dotlet
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