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From MaRDI portal
Cited in
(only showing first 100 items - show all)- VelvetOptimiser
- Velvet
- TopHat
- SSAHA
- Cogent
- Flamingo
- SAGA
- g Profiler
- chequeR
- MMDiff
- BFAST
- PatternHunter
- ALFRED
- CLUSS
- RazerS
- HIVE-hexagon
- BEETL
- BSMAP
- SDSL
- NeoBio
- YASS
- libgapmis
- PASS
- Bowtie 2
- Knuth Morris Pratt
- PatMaN
- MapSplice
- AutoCorres
- ZOOM
- LZ77
- BatMeth
- BWA
- CAP-miRSeq
- CUSHAW
- GASSST
- MAP-RSeq
- Pash
- PSAR-Align
- Big-BWT
- Socrates
- r-index
- Iedera
- MPSCAN
- PerM
- ProCKSI
- RNACompress
- DNACompress
- TAMBIS
- IMP2_Binary_Heap
- CDNA
- EST_GENOME
- HoloClean
- Designing efficient spaced seeds for SOLiD read mapping
- Textual data compression in computational biology: algorithmic techniques
- An overview of multiple sequence alignments and cloud computing in bioinformatics
- scientific article; zbMATH DE number 6724264 (Why is no real title available?)
- SPUMONI
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- A survey of string orderings and their application to the Burrows-Wheeler transform
- Quantifying alternative splicing from paired-end RNA-sequencing data
- Fixed block compression boosting in FM-indexes: theory and practice
- On the string matching with \(k\) mismatches
- Comparing DNA sequence collections by direct comparison of compressed text indexes
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- DRESS: dimensionality reduction for efficient sequence search
- BM-map: Bayesian mapping of multireads for next-generation sequencing data
- Global and local sequence alignment with a bounded number of gaps
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- Multi-pattern matching with bidirectional indexes
- Extending alignments with k-mismatches and -gaps
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis
- Efficient construction of a complete index for pan-genomics read alignment
- Computing the multi-string BWT and LCP array in external memory
- An algorithm for mapping short reads to a dynamically changing genomic sequence
- Approximate all-pairs suffix/prefix overlaps
- Data mining techniques for the life sciences
- Statistical genomics. Methods and protocols
- scientific article; zbMATH DE number 7651154 (Why is no real title available?)
- A randomized numerical aligner (rNA)
- Indeterminate string factorizations and degenerate text transformations
- MIRA
- STAR
- bioperl
- BM-map
- GOstat
- GapsMis
- CloudBurst
- DIALIGN
- GATK
- ProbCons
- SOAP3
- Samtools
- VCFtools
- ANNOTATOR
- ADP_EM
- BLAT
- ANCHOR
- DBAli tools
- CUPSAT
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