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From MaRDI portal
Cited in
(only showing first 100 items - show all)- MIRA
- STAR
- A survey of string orderings and their application to the Burrows-Wheeler transform
- DRESS: dimensionality reduction for efficient sequence search
- Fixed block compression boosting in FM-indexes: theory and practice
- On the string matching with \(k\) mismatches
- A randomized numerical aligner (rNA)
- Computing the multi-string BWT and LCP array in external memory
- bioperl
- BM-map
- GOstat
- Global and local sequence alignment with a bounded number of gaps
- Indeterminate string factorizations and degenerate text transformations
- GapsMis
- ProbCons
- DIALIGN
- SOAP3
- GATK
- CloudBurst
- Efficient construction of a complete index for pan-genomics read alignment
- Extending alignments with k-mismatches and -gaps
- Quantifying alternative splicing from paired-end RNA-sequencing data
- VCFtools
- Samtools
- ANNOTATOR
- LIGPLOT
- NUCPLOT
- DBAli tools
- SCOP2
- CUPSAT
- ENCoM
- DUET
- MAESTRO
- PDB_REDO
- OBSTRUCT
- SFCHECK
- SUPERFAMILY
- HHblits
- BLAT
- MOTIF-EM
- ADP_EM
- GenePattern
- OpenCyto
- HTSeq
- VaZyMolO
- MeDor
- MetaDisorder
- PreDisorder
- MFDp2
- PROFbval
- StrBioLib
- RONN
- ESpritz
- SPINE-D
- PrDOS
- POODLE-I
- ANCHOR
- VNTRseek
- PredPPCrys
- XtalPred
- XANNpred
- FUNC
- IntelliGO
- PhenomeNET
- HPOSim
- Brain
- iPath
- MSEA
- MetaboLights
- Orione
- CISA
- Mugsy
- Prodigal
- ARAGORN
- SnpEff
- VelvetOptimiser
- CONFOLD
- APOLLO
- PconsFold
- MetaPSICOV
- NNcon
- CCMpred
- ANNIE
- HPMV
- dissectHMMER
- antiSMASH
- dbCAN
- Velvet
- BM-map: Bayesian mapping of multireads for next-generation sequencing data
- SeqMap
- SHRiMP
- TopHat
- BioMart
- MUMMER
- IGV
- MEDIPS
- FIMO
- BEDTools
- SSAHA
- featureCounts
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