r-index

MaRDI QIDQ46452swMATHFDO

Official website https://github.com/alshai/r-index

Source code repository https://github.com/alshai/r-index

Described by source

• Efficient construction of a complete index for pan-genomics read alignment
• scientific article; zbMATH DE number 6850405 (Why is no real title available?)

Cited in

(43)

• Comparison of LZ77-type parsings
• A separation between RLSLPs and LZ77
• A faster implementation of online RLBWT and its application to LZ77 parsing
• Universal compressed text indexing
• Wheeler languages
• Soap
• r-indexing the eBWT
• Grammar index by induced suffix sorting
• Computing the original eBWT faster, simpler, and with less memory
• Lempel-Ziv-like parsing in small space
• A combinatorial view on string attractors
• Refining the \(r\)-index
• Wumpus
• Document listing on repetitive collections with guaranteed performance
• VCFtools
• Improved characters distance sampling for online and offline text searching
• PATRICIA
• KMC
• siEDM
• Minimap2
• Bowtie 2
• vg
• DYNAMIC
• dbwt
• get-git-revisions
• LZ77
• BWA
• Big-BWT
• Online LZ77 parsing and matching statistics with RLBWTs
• libdivsufsort
• Brotli
• FRESCO
• Zstandard
• tbwt
• scientific article; zbMATH DE number 7651154 (Why is no real title available?)
• SPUMONI
• Eulertigs
• HumGut
• pufferfish2
• PuffAligner
• MONI
• TwoPaCo
• A compressed dynamic self-index for highly repetitive text collections

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