Minimap2
From MaRDI portal
Cited in
(86)- CheckM
- MetaCoAG
- METAMVGL
- SolidBin
- metaSPAdes
- GraphBin
- metaFlye
- essaMEM
- Edlib
- Winnowing
- lra
- CAMSA
- hybridSPAdes
- GTED
- HINGE
- Canu
- Bandage
- Unicycler
- AGB
- Asgan
- MetaQUAST
- AMBER
- Centrifuge
- Seq2Vec
- LRBinner
- MetaBCC-LR
- MaxBin
- MetaBAT
- OGRE
- oblr
- Metagenomics binning of long reads using read-overlap graphs
- DeepMinimizer: a differentiable framework for optimizing sequence-specific minimizer schemes
- MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs
- Co-linear chaining with overlaps and gap costs
- \textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm
- cctbx
- Gerbil
- SPAdes
- dipSPAdes
- KMC
- CCP4
- Sibelia
- isONclust
- MeShClust
- DNACLUST
- MMseqs2
- Starcode
- EasyCluster2
- SimLoRD
- parasail
- LSC
- Cogent
- Grouper
- Corset
- Mash
- SlideSort
- Rainbow
- d2_cluster
- sourmash
- i-ADHoRe
- CYNTENATOR
- PathRacer
- vg
- PBSIM
- LoRDEC
- r-index
- Big-BWT
- RAPIDS
- Lower density selection schemes via small universal hitting sets with short remaining path length
- Synteny paths for assembly graphs comparison
- STAR
- BCFtools
- Kraken
- tbwt
- GraphChainer
- SPUMONI
- Eulertigs
- HumGut
- CoCoNUT
- pufferfish2
- MUMmer4
- PuffAligner
- MONI
- BMC3C
- GraphAligner
- TwoPaCo
This page was built for software: Minimap2
