Minimap2
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swMATH28780MaRDI QIDQ40494FDOQ40494
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Official website: https://academic.oup.com/bioinformatics/article-abstract/34/18/3094/4994778?redirectedFrom=fulltext
Source code repository: https://github.com/lh3/minimap2
Cited In (86)
- Eulertigs
- GraphChainer
- HumGut
- SPUMONI
- pufferfish2
- PuffAligner
- TwoPaCo
- Lower density selection schemes via small universal hitting sets with short remaining path length
- Winnowing
- \textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm
- MONI
- Synteny paths for assembly graphs comparison
- BMC3C
- CoCoNUT
- MUMmer4
- AMBER
- cctbx
- Gerbil
- SPAdes
- Cogent
- Rainbow
- dipSPAdes
- KMC
- CCP4
- Sibelia
- Corset
- d2_cluster
- DNACLUST
- EasyCluster2
- isONclust
- Grouper
- LSC
- MeShClust
- Mash
- MMseqs2
- parasail
- SimLoRD
- SlideSort
- CYNTENATOR
- Starcode
- i-ADHoRe
- PathRacer
- sourmash
- vg
- PBSIM
- Big-BWT
- LoRDEC
- r-index
- RAPIDS
- DeepMinimizer: a differentiable framework for optimizing sequence-specific minimizer schemes
- Co-linear chaining with overlaps and gap costs
- STAR
- BCFtools
- Kraken
- tbwt
- CheckM
- Edlib
- essaMEM
- GraphBin
- AGB
- Bandage
- MetaCoAG
- METAMVGL
- CAMSA
- metaSPAdes
- Asgan
- metaFlye
- Canu
- lra
- Centrifuge
- GTED
- hybridSPAdes
- HINGE
- LRBinner
- MetaQUAST
- MetaBCC-LR
- MaxBin
- MetaBAT
- OGRE
- oblr
- SolidBin
- Seq2Vec
- Unicycler
- GraphAligner
- Metagenomics binning of long reads using read-overlap graphs
- MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs
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