KMC
From MaRDI portal
Cited in
(34)- deGSM
- metaSPAdes
- Winnowing
- OGRE
- oblr
- Analysis method and algorithm design of biological sequence problem based on generalized k-mer vector
- DeepMinimizer: a differentiable framework for optimizing sequence-specific minimizer schemes
- Efficient construction of a complete index for pan-genomics read alignment
- Fast approximation of frequent \(k\)-mers and applications to metagenomics
- GAGE
- Gerbil
- Effective parallel multicore-optimized k-mers counting algorithm
- Velvet
- KAnalyze
- Turtle
- SDSL
- isONclust
- Minimap2
- Mash
- MaSuRCA
- Rainbowfish
- GATB
- VARI
- r-index
- Lower density selection schemes via small universal hitting sets with short remaining path length
- A randomized parallel algorithm for efficiently finding near-optimal universal hitting sets
- Representation of \(k\)-mer sets using spectrum-preserving string sets
- Rainbowfish: a succinct colored de Bruijn graph representation
- KmerStream
- SAKEIMA
- Squeakr
- Kmerlight
- Kraken
- RNA-Skim
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