Kraken
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swMATH36898MaRDI QIDQ52600FDOQ52600
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Official website: http://ccb.jhu.edu/software/kraken/
Cited In (44)
- HumGut
- CONSULT-II
- MetaPhyler
- TwoPaCo
- Winnowing
- Fast approximation of frequent \(k\)-mers and applications to metagenomics
- BMC3C
- MetaPhlAn
- panX
- Sigma
- MALT
- AMBER
- Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes
- MCFDR
- Quake
- GAGE
- SPAdes
- KMC
- Turtle
- CLARK
- MetaProb
- Mash
- Minimap2
- KmerStream
- Kmerlight
- SAKEIMA
- RNA-Skim
- Squeakr
- SPARSE
- Taxator-tk
- Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3D module identification
- CheckM
- GraphBin
- MetaCoAG
- METAMVGL
- metaSPAdes
- metaFlye
- Centrifuge
- MaxBin
- MetaBAT
- oblr
- SolidBin
- ART
- MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs
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