BWA
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Mason
- Vargas
- AStarix
- CLMB
- metaGEM
- fastp
- DLBI
- GTDB-Tk
- Binning_refiner
- MetaWRAP
- hybridSPAdes
- Asgan
- On statistical modeling of sequencing noise in high depth data to assess tumor evolution
- Wheeler graphs: a framework for BWT-based data structures
- A survey of string orderings and their application to the Burrows-Wheeler transform
- FM-index of alignment with gaps
- A novel specialized single-linkage clustering algorithm for taxonomically ordered data
- Applying the positional Burrows-Wheeler transform to all-pairs Hamming distance
- On the string matching with \(k\) mismatches
- Variance in estimated pairwise genetic distance under high versus low coverage sequencing: the contribution of linkage disequilibrium
- A randomized numerical aligner (rNA)
- Computing the multi-string BWT and LCP array in external memory
- Exome sequencing identifies predisposing and fusion gene in ganglioneuroma, ganglioneuroblastoma and neuroblastoma
- Wheeler languages
- Soap
- Space efficient merging of de Bruijn graphs and Wheeler graphs
- casper
- r-indexing the eBWT
- Fast and optimal sequence-to-graph alignment guided by seeds
- CLMB: deep contrastive learning for robust metagenomic binning
- When a dollar makes a BWT
- A Bayesian nonparametric model for inferring subclonal populations from structured DNA sequencing data
- BM-map
- A resource-frugal probabilistic dictionary and applications in bioinformatics
- Refining the \(r\)-index
- The alternating BWT: an algorithmic perspective
- TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
- Global and local sequence alignment with a bounded number of gaps
- Computing the Burrows-Wheeler transform in place and in small space
- Indeterminate string factorizations and degenerate text transformations
- GapsMis
- Quake
- SOAP3
- GATK
- CloudBurst
- Extending alignments with k-mismatches and -gaps
- Average-case linear-time similar substring searching by the q-gram distance
- Computing the Burrows-Wheeler transform of a string and its reverse in parallel
- SOPRA
- GRASS
- Quantifying alternative splicing from paired-end RNA-sequencing data
- HiTEC
- countmotif
- miRBase
- Approximate search of short patterns with high error rates using the 01^ 0 lossless seeds
- Analytic combinatorics for computing seeding probabilities
- fsaLib
- VCFtools
- Samtools
- SnpEff
- Velvet
- SHRiMP
- Meta-IDBA
- Artemis
- Approximate string matching using a bidirectional index
- Instance guaranteed ratio on greedy heuristic for genome scaffolding
- Designing efficient spaced seeds for SOLiD read mapping
- Cogent
- SeqAn
- BFAST
- PatternHunter
- Full-text indexes for high-throughput sequencing
- De Novo NGS Data Compression
- DNA-seq error correction based on substring indices
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- String-matching and alignment algorithms for finding motifs in NGS data
- ALFRED
- RazerS
- CLUSS
- YASS
- FlyBase
- HIVE-hexagon
- SDSL
- BEETL
- SCALCE
- MEGAHIT
- BESST
- PurBayes
- libgapmis
- PurityEst
- Compressed directed acyclic word graph with application in local alignment
- Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem
- PhyloWGS
- THetA
- PyClone
- Multi-pattern matching with bidirectional indexes
- MERIT
- Bowtie 2
- Knuth Morris Pratt
This page was built for software: BWA
