BWA
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Global and local sequence alignment with a bounded number of gaps
- Full-text indexes for high-throughput sequencing
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- String-matching and alignment algorithms for finding motifs in NGS data
- Multi-pattern matching with bidirectional indexes
- Extending alignments with k-mismatches and -gaps
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis
- TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
- When a dollar makes a BWT
- Computing the multi-string BWT and LCP array in external memory
- Applying the positional Burrows-Wheeler transform to all-pairs Hamming distance
- An algorithm for mapping short reads to a dynamically changing genomic sequence
- Approximate all-pairs suffix/prefix overlaps
- Wheeler languages
- Variance in estimated pairwise genetic distance under high versus low coverage sequencing: the contribution of linkage disequilibrium
- Wheeler graphs: a framework for BWT-based data structures
- Instance guaranteed ratio on greedy heuristic for genome scaffolding
- Computing the Burrows-Wheeler transform in place and in small space
- Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
- Approximate string matching using a bidirectional index
- scientific article; zbMATH DE number 7651154 (Why is no real title available?)
- Computing the Burrows-Wheeler transform of a string and its reverse in parallel
- De Novo NGS Data Compression
- A Bayesian nonparametric model for inferring subclonal populations from structured DNA sequencing data
- A randomized numerical aligner (rNA)
- Analytic combinatorics for computing seeding probabilities
- DNA-seq error correction based on substring indices
- SpliceTAPyR -- an efficient method for transcriptome alignment
- Indeterminate string factorizations and degenerate text transformations
- r-indexing the eBWT
- Soap
- casper
- BM-map
- GapsMis
- CloudBurst
- GATK
- Quake
- SOAP3
- GRASS
- SOPRA
- HiTEC
- countmotif
- miRBase
- fsaLib
- Samtools
- VCFtools
- SnpEff
- Artemis
- SHRiMP
- Meta-IDBA
- Velvet
- A Bayesian feature allocation model for tumor heterogeneity
- Cogent
- SeqAn
- BFAST
- PatternHunter
- ALFRED
- CLUSS
- FlyBase
- RazerS
- HIVE-hexagon
- BEETL
- SDSL
- SCALCE
- BESST
- YASS
- MEGAHIT
- libgapmis
- PurBayes
- PASS
- PurityEst
- PhyloWGS
- PyClone
- THetA
- MERIT
- Bowtie 2
- Knuth Morris Pratt
- Bambus 2
- PatMaN
- SciClone
- deBGA
- PairClone
- SplitMEM
- vg
- TreeClone
- MapSplice
- PALMapper
- AutoCorres
- dbwt
- DYNAMIC
- ZOOM
- get-git-revisions
- LZ77
- GATB
- iTOL
- Rainbowfish
- HapMix
- BatMeth
- CAP-miRSeq
- CUSHAW
This page was built for software: BWA
