PyClone
From MaRDI portal
Cited in
(30)- Baycount: a Bayesian decomposition method for inferring tumor heterogeneity using RNA-seq counts
- Multiscale blind source separation
- Character-based phylogeny construction and its application to tumor evolution
- RNDClone: tumor subclone reconstruction based on integrating DNA and RNA sequence data
- A Bayesian nonparametric model for inferring subclonal populations from structured DNA sequencing data
- BM-map
- TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
- Phylogeny-based tumor subclone identification using a Bayesian feature allocation model
- GATK
- Samtools
- Estimating Latent Cell Subpopulations with Bayesian Feature Allocation Models
- featureCounts
- SNV-PPILP
- PurBayes
- PurityEst
- BayCount
- PhyloWGS
- THetA
- SciClone
- BitPhylogeny
- TreeClone
- PairClone
- BayClone2
- rec-BTP
- AncesTree
- SPRUCE
- BWA
- TEMULATOR
- A Bayesian feature allocation model for tumor heterogeneity
- Measuring evolutionary cancer dynamics from genome sequencing, one patient at a time
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