Phylogeny-based tumor subclone identification using a Bayesian feature allocation model

DOI10.1214/18-AOAS1223zbMath1423.62154arXiv1803.06393OpenAlexW2962710603WikidataQ127664164 ScholiaQ127664164MaRDI QIDQ2318681

Hongyu Zhao, Li Zeng, Joshua L. Warren

Publication date: 15 August 2019

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1803.06393

zbMATH Keywords

model selectiontumor evolutionintra-tumor heterogeneitylatent feature allocation

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Related Items (3)

Comparison and Bayesian Estimation of Feature Allocations ⋮ Phylogeny-based tumor subclone identification using a Bayesian feature allocation model ⋮ RNDClone: tumor subclone reconstruction based on integrating DNA and RNA sequence data

Uses Software

• BayesDA
• PhyloWGS
• PyClone
• SciClone
• BitPhylogeny

Cites Work

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• A phylogenetic latent feature model for clonal deconvolution
• A Bayesian feature allocation model for tumor heterogeneity
• Slice sampling. (With discussions and rejoinder)
• Phylogeny-based tumor subclone identification using a Bayesian feature allocation model

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