DNA-Seq Error Correction Based on Substring Indices

DOI10.1007/978-3-319-59826-0_7zbMath1458.92030OpenAlexW2754345248MaRDI QIDQ3305526

Hugues Richard, David Weese, Marcel H. Schulz

Publication date: 7 August 2020

Published in: Algorithms for Next-Generation Sequencing Data (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-59826-0_7

zbMATH Keywords

DNA sequenceserror correctiongenome sequencingsubstring indices

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Uses Software

• ALLPATHS
• Quake
• GAGE
• HiTEC
• Fiona
• BWA
• Reptile
• SHREC

Cites Work

• Replacing suffix trees with enhanced suffix arrays
• On-line construction of suffix trees
• Multiple filtration and approximate pattern matching
• A fast bit-vector algorithm for approximate string matching based on dynamic programming
• A Space-Economical Suffix Tree Construction Algorithm
• An Eulerian path approach to DNA fragment assembly
• Unnamed Item

This page was built for publication: DNA-Seq Error Correction Based on Substring Indices