Replacing suffix trees with enhanced suffix arrays
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Publication:876707
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Cites work
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- A universal algorithm for sequential data compression
- Algorithms on Strings, Trees and Sequences
- An experimental study of an opportunistic index
- Compressed suffix arrays and suffix trees with applications to text indexing and string matching (extended abstract)
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- Linear-time construction of suffix arrays (extended abstract)
- Space efficient linear time construction of suffix arrays
- Sublinear approximate string matching and biological applications
- Suffix Arrays: A New Method for On-Line String Searches
Cited in
(86)- Space efficient linear time construction of suffix arrays
- Permuted Longest-Common-Prefix Array
- Linearized suffix tree: An efficient index data structure with the capabilities of suffix trees and suffix arrays
- Succinct Non-overlapping Indexing
- An Online Algorithm for Finding the Longest Previous Factors
- Alphabet-independent algorithms for finding context-sensitive repeats in linear time
- Large-scale detection of repetitions
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- Finding range minima in the middle: approximations and applications
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- Wee LCP
- From Suffix Trees to Suffix Vectors
- On-line construction of compact suffix vectors and maximal repeats
- Searching for smallest grammars on large sequences and application to DNA
- String matching with alphabet sampling
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- Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem
- On parsing optimality for dictionary-based text compression -- the \texttt{Zip} case
- Spectral concepts in genome informational analysis
- Computing longest previous factor in linear time and applications
- Succinct non-overlapping indexing
- String inference from longest-common-prefix array
- Longest repeats with a block of \(k\) don't cares
- Computing suffix links for suffix trees and arrays
- scientific article; zbMATH DE number 1945184 (Why is no real title available?)
- The longest common substring problem
- Faster compressed suffix trees for repetitive collections
- An improved algorithm for the all-pairs suffix-prefix problem
- Lempel-Ziv Factorization Revisited
- Construction of Aho Corasick automaton in linear time for integer alphabets
- Faster entropy-bounded compressed suffix trees
- The principles of informational genomics
- Locally compressed suffix arrays
- Converting suffix trees into factor/suffix oracles
- A fast algorithm for the all-pairs suffix-prefix problem
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- Lightweight LCP construction for very large collections of strings
- In-place update of suffix array while recoding words
- Faster online computation of the succinct longest previous factor array
- On space efficient two dimensional range minimum data structures
- DARN! A weighted constraint solver for RNA motif localization
- Practical compressed suffix trees
- Bidirectional search in a string with wavelet trees and bidirectional matching statistics
- Inducing enhanced suffix arrays for string collections
- Indexing and querying character sets in one- and two-dimensional words
- String Processing and Information Retrieval
- Tighter bounds for the sum of irreducible LCP values
- Burrows-Wheeler transform and LCP array construction in constant space
- Note on the greedy parsing optimality for dictionary-based text compression
- Engineering parallel string sorting
- Kernel-based machine learning for fast text mining in R
- LCP array construction in external memory
- Efficient construction of a compressed de Bruijn graph for pan-genome analysis
- The affix array data structure and its applications to RNA secondary structure analysis
- Using static suffix array in dynamic application: case of text compression by longest first substitution
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- Fast, practical algorithms for computing all the repeats in a string
- Counting suffix arrays and strings
- Faster repetition-aware compressed suffix trees based on block trees
- Sparse and truncated suffix trees on variable-length codes
- Computational graph pangenomics: a tutorial on data structures and their applications
- On succinct representations of binary trees
- Property Suffix Array with Applications in Indexing Weighted Sequences
- Indexing a sequence for mapping reads with a single mismatch
- Computing all-vs-all MEMs in grammar-compressed text
- Crochemore's repetitions algorithm revisited: computing runs
- String Covering: A Survey
- DNA-seq error correction based on substring indices
- Engineering a lightweight external memory suffix array construction algorithm
- On the computation of longest previous non-overlapping factors
- Full-text indexes for high-throughput sequencing
- Kings, name days, lazy servants and magic
- Tighter bounds for the sum of irreducible LCP values
- Finding all maximal perfect haplotype blocks in linear time
- The virtual suffix tree
- Online Suffix Tree Construction for Streaming Sequences
- Faster repetition-aware compressed suffix trees based on block trees
- Optimal in-place suffix sorting
- Sliding suffix tree
- Locating maximal approximate runs in a string
- Better external memory LCP array construction
- Space-efficient parallel construction of succinct representations of suffix tree topologies
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