casper

MaRDI QIDQ21353swMATHFDO

Official website http://www.bioconductor.org/packages/release/bioc/manuals/casper/man/casper.pdf

Cited in

(12)

• MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
• Bayesian estimation of differential transcript usage from RNA-seq data
• Quantifying alternative splicing from paired-end RNA-sequencing data
• TopHat
• RSEM
• EBSeq
• A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
• GENCODE
• DRIMSeq
• WemIQ
• MITIE
• Corrigendum: Quantifying alternative splicing from paired-end RNA-sequencing data

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