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From MaRDI portal
Cited in
(only showing first 100 items - show all)- GeneHug-GEPIS
- GenomeGraphs
- SeqMap
- RIPSeeker
- inSilicoDb
- GSNAP
- RSEM
- GeneSplicer
- Gviz
- GBrowse
- GRAIL
- MEDIPS
- PipMaker
- OrganismDbi
- Oncomine
- MAKER-P
- MAKER
- NGS-QC
- MetaVelvet
- MetaGeneAnnotator
- pyDNase
- PROPER
- PHRAP
- recount
- Rtracklayer
- ROAST
- Rsubread
- RePS
- Trimmomatic
- SortMeRNA
- TagCleaner
- WAR
- SSAHA
- VarSifter
- VariantTools
- VariantAnnotation
- Improved variational Bayes inference for transcript expression estimation
- GENCODE
- ChemSpot
- BEETL
- GCTA
- DRIMSeq
- DNMAD
- FunCoup
- MATHT
- miTarget
- IUTA
- rSeqDiff
- TopHat-Fusion
- VarScan
- Bioconda
- clusterProfiler
- HISAT
- RNASeqR
- miRecords
- systemPipeR
- SpliceTrap
- eSNV-detect
- HaploReg
- MapSplice
- ReQON
- Salmon
- SomaticSniper
- Wileup
- RapMap
- Yanagi
- MITIE
- WemIQ
- PLNseq
- Rqc
- Rsamtools
- GenomeTools
- Statistical modeling of RNA-Seq data
- CircR2Disease
- Sequence analysis and modern C++. The creation of the SeqAn3 bioinformatics library
- Bayesian estimation of differential transcript usage from RNA-seq data
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Bioinformatics. Volume II: structure, function, and applications
- FLEXBAR
- libsequence
- PALADIN
- SeqLib
- shiki
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- Limit theorems for empirical Rényi entropy and divergence with applications to molecular diversity analysis
- Comparative gene finding. Models, algorithms and implementation
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- Quantifying alternative splicing from paired-end RNA-sequencing data
- Data mining of the cancer-related lncRNAs GO terms and KEGG pathways by using mRMR method
- MATHT: a web server for comprehensive transcriptome data analysis
- Comparing DNA sequence collections by direct comparison of compressed text indexes
- Yanagi: transcript segment library construction for RNA-seq quantification
- Computational cell biology. Methods and protocols
- Statistical genomics. Methods and protocols
- SpliceTAPyR -- an efficient method for transcriptome alignment
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
- RNA bioinformatics
- STAR
- Bioconductor
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