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From MaRDI portal
Cited in
(only showing first 100 items - show all)- PALADIN
- SeqLib
- libsequence
- FLEXBAR
- shiki
- STAR
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Bioconductor
- MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
- Bayesian estimation of differential transcript usage from RNA-seq data
- Bioinformatics. Volume II: structure, function, and applications
- MATHT: a web server for comprehensive transcriptome data analysis
- Computational cell biology. Methods and protocols
- oligo
- gcrma
- edgeR
- RankProd
- onechannelgui
- DEGseq
- Sequence analysis and modern C++. The creation of the SeqAn3 bioinformatics library
- Soap
- casper
- BaySeq
- DEseq
- limma
- RNA bioinformatics
- JIGSAW
- AUGUSTUS
- Limit theorems for empirical Rényi entropy and divergence with applications to molecular diversity analysis
- Quantifying alternative splicing from paired-end RNA-sequencing data
- BioNet
- Voom
- Evigan
- Biostrings
- VCFtools
- CompaRNA
- ShortRead
- BLAT
- HTSeq
- Galaxy
- FastQC
- DoubleExpSeq
- DiffSplice
- Trimmomatic
- RNAexinv
- RNAfbinv
- Rnaz
- CentroidAlign
- COFOLD
- PicXAA-R
- CENTROIDFOLD
- IPknot
- DAFS
- PETfold
- PPfold
- RNAG
- R-Coffee
- RNAspa
- RNASTAR
- Assemble
- R4RNA
- RILogo
- RNA2D3D
- RSeQC
- SeqMap
- ASPIC
- PIntron
- Exogean
- REDItools
- NGS-Trex
- SortMeRNA
- TagCleaner
- Minimus
- RAST
- FragGeneScan
- RSEM
- EBSeq
- RIPSeeker
- PARalyzer
- DARNED
- ExpEdit
- NGS QC Toolkit
- PatSearch
- WAR
- SCOOP
- AstexViewer
- BioMart
- ASPicDB
- PolyA_DB
- ASTALAVISTA
- OptiRNAi
- OligoWalk
- PipMaker
- GMAP
- IGV
- CellMiner
- AnnotationDbi
- GenomicFeatures
- AnnotationHub
- OrganismDbi
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