Computational cell biology. Methods and protocols
DOI10.1007/978-1-4939-8618-7zbMath1417.92006MaRDI QIDQ1721982
No author found.
Publication date: 13 February 2019
Published in: Methods in Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/978-1-4939-8618-7
noise; differential expression; big data; RNA-seq; regulatory networks; microRNA; protein-protein interaction network; host-parasite interaction; genome wide association study; ATAC-seq; cell cycle transition; computational prediction of protein complex; context filtering; drug toxicity prediction; dynamic signalling; epigenetic landscape; fluorescence activated cell sorting; long non-coding RNA; miRNA-target interaction network; multi-omics; multilayer regulatory networks; qualitative modelling of regulatory networks; rule-based methods; spatial analysis of functional enrichment (SAFE); virus-host interaction
92C40: Biochemistry, molecular biology
92C37: Cell biology
92-06: Proceedings, conferences, collections, etc. pertaining to biology
92-08: Computational methods for problems pertaining to biology
92C42: Systems biology, networks
Uses Software
- R
- Graphviz
- Bioconductor
- gplots
- PLINK
- gcrma
- edgeR
- igraph
- WGCNA
- BoolNet
- Cytoscape
- COPASI
- Dynagraph
- BioNet
- KEGG
- RedeR
- Cellnoptr
- iPath
- TopHat
- GEOquery
- inSilicoDb
- BioGRID
- CellNOpt
- IntAct
- ClueGO
- ChemSpot
- GCTA
- STRING
- PISKaS
- Kappa
- PISKa
- KaSim
- HIPPIE
- DISEASES
- dmGWAS
- GWAPP
- SignaLink
- iHOP
- AlzPathway
- ConsensusPathDB
- dbPTM
- HuPho
- InnateDB
- MatrixDB
- Negatome
- Phospho.ELM
- iPfam
- PIBASE
- VirHostNet
- VirusMentha
- SQUAD
- Jimena
- miRNet
- miRecords
- SM2miR
- EpimiR
- HTqPCR
- miRTarBase
- NPInter
- WikiPathways
- RTCGA
- inSilicoMerging
- ProtNet
- DOMINE
- IDDI
- MOPED
- PaxDb
- COMPARTMENTS
- ATtRACT
- YEASTRACT
- GNAT
- PathCellNet
- SMPDB
- NET-SYNTHESIS
- PRS
- ANIMO
- STRINGdb
