COPASI
From MaRDI portal
Cited in
(only showing first 100 items - show all)- StructuralIdentifiability.jl
- BasiCO
- MobsPy
- SIAN
- rsconnect
- CoRC
- Dynamical Systems Toolbox
- DSSZ-MC
- Bio-PEPA
- SCAMP
- Stability and phase transitions in a mathematical model of Duchenne muscular dystrophy
- HSimulator: hybrid stochastic/deterministic simulation of biochemical reaction networks
- The Java environment for nature-inspired approaches (JENA): a workbench for biocomputing and biomodelling enthusiasts
- Model of colonic inflammation: immune modulatory mechanisms in inflammatory bowel disease
- Stochastic modelling of the eukaryotic heat shock response
- Gene regulatory networks. Methods and protocols
- Computational cell biology. Methods and protocols
- Petri net models for the semi-automatic construction of large scale biological networks
- CellML
- Modeling non-homologous end joining
- The union between structural and practical identifiability makes strength in reducing oncological model complexity: a case study
- A computational model of auxin and pH dynamics in a single plant cell
- The markup is the model: reasoning about systems biology models in the semantic web era
- Stochastic rate parameter inference using the cross-entropy method
- PoCaB
- PySCeS
- StochKit
- WGCNA
- Modularized smad-regulated TGF\(\beta \) signaling pathway
- sbtoolbox
- Stella
- BioStream
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- GEPASI
- E-CELL
- The FRiND model: a mathematical model for representing macrophage plasticity in muscular dystrophy pathogenesis
- MetaCyc
- MEIGO
- Distributed computation with continual population growth
- DAISY
- BioNetGen
- MobsPy: a meta-species language for chemical reaction networks
- DBSolve
- Dynamic publication media with the COPASI R connector (CoRC)
- BIOCHAM
- Celldesigner
- Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach
- MoMo
- Casaal
- Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator
- Metabolic rate constants: some computational aspects
- Computing difference abstractions of linear equation systems
- Accuracy analysis of hybrid stochastic simulation algorithm on linear chain reaction systems
- HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
- Methods of model reduction for large-scale biological systems: a survey of current methods and trends
- A nonlinear mathematical model of cell-mediated immune response for tumor phenotypic heterogeneity
- PAREMERA
- Modeling the effect of Tat inhibitors on HIV latency
- SynTReN
- LBS
- BlenX
- A logic of behaviour in context
- libSBML
- StochSens
- PySB
- BioModels
- KEGG
- BiNGO
- StochKit2
- A mathematical model representing cellular immune development and response to \textit{Salmonella} of chicken intestinal tissue
- Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations
- Insights into the dynamics of ligand-induced dimerisation via mathematical modelling and analysis
- StochDynTools
- K-angle
- ENZPACK
- SigrafW
- AMIGO
- On the numerical solution of the general kinetic ``\(K\)-angle reaction system
- sglasso
- Bio-SPICE
- Springer Handbook of Bio-/Neuroinformatics
- SIRENE
- BioGRID
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- iNA
- HRSSA
- Computational biology analysis of platelet signaling reveals roles of feedbacks through phospholipase C and inositol 1,4,5-trisphosphate 3-kinase in controlling amplitude and duration of calcium oscillations
- Systems Biology: The Next Frontier for Bioinformatics
- How Petri nets might enhance your systems biology toolkit
- Model selection for factorial Gaussian graphical models with an application to dynamic regulatory networks
- Stochastic modelling for systems biology.
- pnea
- SensSB
- CERENA
- GillespieSSA
- IntAct
- SBML-SAT
- Virtual Cell
- HSimulator
- Hy3S
This page was built for software: COPASI
