Stochastic modelling for systems biology.
zbMATH Open1300.92004MaRDI QIDQ3075657FDOQ3075657
Authors: Darren J. Wilkinson 
Publication date: 16 February 2011
Recommendations
Markov processesFokker-Planck equationsstochastic differential equationslinear noise approximationstochastic kinetic models
Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01)
Cited In (40)
- On particle methods for parameter estimation in state-space models
- Particle filters
- Delayed acceptance particle MCMC for exact inference in stochastic kinetic models
- Study for modeling the spontaneous fluctuation in biological system
- Stability analysis for stochastic hybrid systems: a survey
- Inference for dynamic and latent variable models via iterated perturbed Bayes maps
- Efficient sampling of conditioned Markov jump processes
- The stochastic SEIR model before extinction: computational approaches
- An efficient forward-reverse expectation-maximization algorithm for statistical inference in stochastic reaction networks
- Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: an application to single cell data
- Stochastic modelling of the eukaryotic heat shock response
- Some mathematical models of intermolecular autophosphorylation
- Safety verification for regime-switching jump diffusions via barrier certificates
- Analysis of Markov jump processes under terminal constraints
- Stochastic modelling for systems biology.
- Direct statistical inference for finite Markov jump processes via the matrix exponential
- Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions
- Solutions to the Minimum Variance Problem Using Delaunay Triangulation
- Data-driven, variational model reduction of high-dimensional reaction networks
- Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models
- Efficient parametric inference for stochastic biological systems with measured variability
- Multiscale Global Sensitivity Analysis for Stochastic Chemical Systems
- Exact variance-reduced simulation of lattice continuous-time Markov chains with applications in reaction networks
- Bayesian inference for Markov jump processes with informative observations
- Split-step Milstein methods for multi-channel stiff stochastic differential systems
- Stability verification for a class of stochastic hybrid systems by semidefinite programming
- Mutation and selection in bacteria: modelling and calibration
- Title not available (Why is that?)
- Title not available (Why is that?)
- Type-dependent irreversible stochastic spin models for genetic regulatory networks at the level of promotion-inhibition circuitry
- Efficient \(\mathrm{SMC}^2\) schemes for stochastic kinetic models
- Accelerating inference for diffusions observed with measurement error and large sample sizes using approximate Bayesian computation
- A network epidemic model for online community commissioning data
- Exploiting multi-core architectures for reduced-variance estimation with intractable likelihoods
- Diagnostics for assessing the linear noise and moment closure approximations
- Multiscale modeling of wear degradation in cylinder liners
- Stochastic modelling for systems biology
- Multivariate normal approximation for the stochastic simulation algorithm: limit theorem and applications
- Title not available (Why is that?)
- Piecewise approximate Bayesian computation: fast inference for discretely observed Markov models using a factorised posterior distribution
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