E-CELL
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Cited in
(38)- Network-based analysis of metabolic regulation in the human red blood cell
- A Novel algorithm for the numerical integration of systems of ordinary differential equations arising in chemical problems
- Petri net models for the semi-automatic construction of large scale biological networks
- A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter
- MODELING THE NONLINEAR DYNAMICS OF CELLULAR SIGNAL TRANSDUCTION
- Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes
- Gene regulatory networks. Methods and protocols
- Computer modelling of antifolate inhibition of folate metabolism using hybrid functional Petri nets
- Bio-entity network for analysis of protein-protein interaction networks
- Constraints-based models: regulation of gene expression reduces the steady-state solution space
- KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
- J3DV
- KINSOLVER
- IntelliGEN
- SCAMP
- MCELL
- Stella
- GEPASI
- MetaModel
- MEG
- URDME
- ReaDDy
- MesoRD
- PARTRAC
- Virtual Cell
- STOCHSIM
- Diffusion-controlled reactions modeling in Geant4-DNA
- JigCell
- MoVisPP
- VisANT
- A-Cell
- REVEAL
- Data mining in bioinformatics
- Applications and Theory of Petri Nets 2004
- BDI-modelling of complex intracellular dynamics
- Simulating cellular dynamics through a coupled transcription, translation, metabolic model.
- Time Petri nets for modelling and analysis of biochemical networks
- A hierarchic collision detection algorithm for simple Brownian dynamics
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