Applications and Theory of Petri Nets 2004

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Cited In (22)

Hybrid Petri Nets for Modelling the Eukaryotic Cell Cycle
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An algorithmic framework for network reconstruction
Reconstructing the regulatory network controlling commitment and sporulation in \textit{Physarum polycephalum} based on hierarchical Petri net modelling and simulation
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Stochastic Petri net models of \(\text{Ca}^{2+}\) signaling complexes and their analysis
Colored Petri nets to model gene mutation and amino acids classification
Dependent shrink of transitions for calculating firing frequencies in signaling pathway Petri net model
Petri net modelling of biological regulatory networks
Modeling the process of human body iron homeostasis using a variant of timed Petri nets
Reduction techniques for network validation in systems biology
A mathematical approach to solve the network reconstruction problem
Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
Reconstruction of extended Petri nets from time-series data by using logical control functions
How Might Petri Nets Enhance Your Systems Biology Toolkit
Petri nets for modelling metabolic pathways: a survey
Signal transduction pathways as concurrent reactive systems: a modeling and simulation approach using LSCs and the Play-Engine
Modelling of biochemical reactions by stochastic automata networks
Design Issues for Qualitative Modelling of Biological Cells with Petri Nets
Tissue Systems and Petri Net Synthesis
Biomodel Engineering – From Structure to Behavior

Uses Software

GEPASI
E-CELL

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