Applications and Theory of Petri Nets 2004

DOI10.1007/B98283MaRDI QIDQ5712331zbMATH OpenOpenAlexFDO

Authors Monika Heiner, Ina Koch

Publication date 23 December 2005

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/b98283

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

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(29)

• Hybrid Petri Nets for Modelling the Eukaryotic Cell Cycle
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• Reconstructing the regulatory network controlling commitment and sporulation in \textit{Physarum polycephalum} based on hierarchical Petri net modelling and simulation
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• Verification of dynamic behaviour in qualitative molecular networks describing gene regulation, signalling and whole-cell metabolism
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• Stochastic Petri net models of \(\text{Ca}^{2+}\) signaling complexes and their analysis
• Colored Petri nets to model gene mutation and amino acids classification
• How Petri nets might enhance your systems biology toolkit
• Petri net modelling of biological regulatory networks
• Dependent shrink of transitions for calculating firing frequencies in signaling pathway Petri net model
• Modeling the process of human body iron homeostasis using a variant of timed Petri nets
• Reduction techniques for network validation in systems biology
• A mathematical approach to solve the network reconstruction problem
• Modeling in systems biology. The Petri net approach. With a foreword of Jens Georg Reich.
• Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
• A Petri net based model of oxidative stress in atherosclerosis
• Reconstruction of extended Petri nets from time-series data by using logical control functions
• Petri nets for modelling metabolic pathways: a survey
• An analysis of the Petri net based model of the human body iron homeostasis process
• Signal transduction pathways as concurrent reactive systems: a modeling and simulation approach using LSCs and the Play-Engine
• Systems approach based on Petri nets as a method for modeling and analysis of complex biological systems presented on the example of atherosclerosis development process
• Modelling of biochemical reactions by stochastic automata networks
• Design Issues for Qualitative Modelling of Biological Cells with Petri Nets
• Tissue Systems and Petri Net Synthesis
• Biomodel Engineering – From Structure to Behavior

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Uses Software

• E-CELL
• GEPASI

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