A mathematical approach to solve the network reconstruction problem

DOI10.1007/S00186-007-0178-5MaRDI QIDQ2482687zbMATH OpenOpenAlexFDO

Authors Wolfgang Marwan, Annegret K. Wagler, Robert Weismantel

Publication date 23 April 2008

Published in Mathematical Methods of Operations Research (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00186-007-0178-5

zbMATH Keywords

Integer decompositionModeling biological systemsReverse engineering

Mathematics Subject Classification ID

Deterministic network models in operations research (90B10)

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• Applications and Theory of Petri Nets 2004
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Cited in

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• Reconstruction of the parameters of the homogeneous linear models of the gene network dynamics
• Charlie -- an extensible Petri net analysis tool
• Automatic network reconstruction using ASP
• scientific article; zbMATH DE number 1961975 (Why is no real title available?)
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• The actual status of quantitative approaches in biology: problems and perspectives
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• Preprocessing for network reconstruction: feasibility test and handling infeasibility
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• Completing SBGN-AF networks by logic-based hypothesis finding
• Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
• The combinatorics of modeling and analyzing biological systems
• Reconstructing Chain Functions in Genetic Networks
• A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification
• Encoding the dynamics of deterministic systems
• A mathematical model for optimal functional disruption of biochemical networks
• Reconstructing biochemical cluster networks
• Algebraic network reconstruction of discrete dynamical systems

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