A mathematical approach to solve the network reconstruction problem

DOI10.1007/S00186-007-0178-5zbMATH Open1146.90016OpenAlexW2000875416MaRDI QIDQ2482687FDOQ2482687

Authors: Wolfgang Marwan, Annegret K. Wagler, Robert Weismantel 

Publication date: 23 April 2008

Published in: Mathematical Methods of Operations Research (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00186-007-0178-5

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zbMATH Keywords

Reverse engineeringInteger decompositionModeling biological systems

Mathematics Subject Classification ID

Deterministic network models in operations research (90B10)

Cites Work

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• Applications and Theory of Petri Nets 2004
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• A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification
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• The combinatorics of modeling and analyzing biological systems
• Network Reconstruction – A New Approach to the Traveling Salesman Problem and Complexity
• The actual status of quantitative approaches in biology: problems and perspectives
• Automatic network reconstruction using ASP
• Algebraic network reconstruction of discrete dynamical systems
• Homologous control of protein signaling networks
• Augmented sparse reconstruction of protein signaling networks
• Title not available (Why is that?)
• Preprocessing for network reconstruction: feasibility test and handling infeasibility
• Efficient reengineering of meso-scale topologies for functional networks in biomedical applications
• Reconstruction of extended Petri nets from time-series data by using logical control functions
• Encoding the dynamics of deterministic systems
• Reconstruction of the parameters of the homogeneous linear models of the gene network dynamics
• Reconstructing Chain Functions in Genetic Networks
• A mathematical model for optimal functional disruption of biochemical networks
• Reconstructing biochemical cluster networks
• Charlie -- an extensible Petri net analysis tool
• Completing SBGN-AF networks by logic-based hypothesis finding

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