Algebraic network reconstruction of discrete dynamical systems

DOI10.1016/J.AAM.2024.102760MaRDI QIDQ6616299zbMATH OpenFDO

Authors Heather A. Harrington, Mike Stillman, Alan Veliz-Cuba

Publication date 9 October 2024

Published in Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/J.AAM.2024.102760

zbMATH Keywords

algebraic systems biologydiscrete dynamical systemsnetwork inferencepseudomonomial idealreverse engineeringwiring diagrams

Mathematics Subject Classification ID

Combinatorial aspects of commutative algebra (05E40) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25) Dynamical systems in biology (37N25) Applications of functional analysis in biology and other sciences (46N60) Graph theory (including graph drawing) in computer science (68R10) Deterministic network models in operations research (90B10) General biology and biomathematics (92B05) Systems biology, networks (92C42) Discrete mathematics (educational aspects) (97N70)

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Cites work

• A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification
• An algebraic approach to reverse engineering finite dynamical systems arising from biology
• Boolean dynamics of networks with scale-free topology
• Emergence of Scaling in Random Networks
• Feedback control systems analysis of density dependent population dynamics
• Neural codes and the factor complex
• Polarization of neural rings
• Reverse-engineering of polynomial dynamical systems
• Sensitivity and elasticity analysis of a Lur'e system used to model a population subject to density-dependent reproduction
• Spline functions. Computational methods
• The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes

Cited in

(1)

• A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification

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