Neural codes and the factor complex

DOI10.1016/J.AAM.2019.101977zbMATH Open1471.92076arXiv1904.03235OpenAlexW2996589193WikidataQ126567712 ScholiaQ126567712MaRDI QIDQ2300577FDOQ2300577

Anne Shiu, Laura Felicia Matusevich, Alexander Ruys de Perez

Publication date: 27 February 2020

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Abstract: We introduce the factor complex of a neural code, and show how intervals and maximal codewords are captured by the combinatorics of factor complexes. We use these results to obtain algebraic and combinatorial characterizations of max-intersection-complete codes, as well as a new combinatorial characterization of intersection-complete codes.

Full work available at URL: https://arxiv.org/abs/1904.03235

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zbMATH Keywords

combinatoricscommutative algebracognitionneuronsStanley-Reisner

Mathematics Subject Classification ID

Neural biology (92C20) Combinatorial aspects of commutative algebra (05E40) Combinatorial aspects of simplicial complexes (05E45) Computational methods for problems pertaining to biology (92-08) Applications of the theory of convex sets and geometry of numbers (covering radius, etc.) to coding theory (94B75)

Cites Work

• Neural ideals in SageMath
• Reverse-engineering of polynomial dynamical systems
• The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes
• An Algebraic Approach to Reverse Engineering Finite Dynamical Systems Arising from Biology
• On open and closed convex codes
• Obstructions to convexity in neural codes
• What Makes a Neural Code Convex?
• Strongly maximal intersection-complete neural codes on grids are convex
• Every binary code can be realized by convex sets
• Convex Union Representability and Convex Codes
• Gröbner bases of neural ideals
• Neural ideals and stimulus space visualization
• Strengthening Relationships between Neural Ideals and Receptive Fields
• Algebraic signatures of convex and non-convex codes
• Sparse neural codes and convexity

Cited In (9)

• Morphisms of Neural Codes
• Oriented matroids and combinatorial neural codes
• Canonical forms of neural ideals
• Hyperplane Neural Codes and the Polar Complex
• Nondegenerate Neural Codes and Obstructions to Closed-Convexity
• Wheels: a new criterion for non-convexity of neural codes
• Algebraic network reconstruction of discrete dynamical systems
• Embedding dimension phenomena in intersection complete codes
• Indices for Testing Neural Codes

Uses Software

• neural ideal

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