Neural ideals in SageMath
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Publication:1662229
DOI10.1007/978-3-319-96418-8_22zbMATH Open1395.68351arXiv1609.09602OpenAlexW2963052859MaRDI QIDQ1662229FDOQ1662229
Authors: Ethan Petersen, Nora Youngs, Ryan Kruse, Dane Miyata, R. E. Garcia, Luis David Garcia Puente 
Publication date: 17 August 2018
Abstract: A major area in neuroscience research is the study of how the brain processes spatial information. Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps, associating to each neuron a convex receptive field. An important problem consists in determining what stimulus space features can be extracted directly from a neural code. The neural ideal is an algebraic object that encodes the full combinatorial data of a neural code. This ideal can be expressed in a canonical form that directly translates to a minimal description of the receptive field structure intrinsic to the code. In here, we describe a SageMath package that contains several algorithms related to the canonical form of a neural ideal.
Full work available at URL: https://arxiv.org/abs/1609.09602
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Symbolic computation and algebraic computation (68W30) Neural biology (92C20) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25)
Cited In (21)
- Canonical forms of neural ideals
- Neural codes and homotopy types: mathematical models of place field recognition
- Analysis of combinatorial neural codes: an algebraic approach
- Homomorphisms preserving neural ideals
- Nondegenerate Neural Codes and Obstructions to Closed-Convexity
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- On the 8 case of the Sylvester conjecture
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