Neural ideals in SageMath

DOI10.1007/978-3-319-96418-8_22MaRDI QIDQ1662229zbMATH OpenOpenAlexFDO

Authors Ethan Petersen, Nora Youngs, Ryan Kruse, Dane Miyata, R. E. Garcia, Luis David Garcia Puente

Publication date 17 August 2018

Full work available at URL https://arxiv.org/abs/1609.09602

zbMATH Keywords

canonical formneural codesneural idealneural ring

Mathematics Subject Classification ID

Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25) Symbolic computation and algebraic computation (68W30) Neural biology (92C20)

Abstract: A major area in neuroscience research is the study of how the brain processes spatial information. Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps, associating to each neuron a convex receptive field. An important problem consists in determining what stimulus space features can be extracted directly from a neural code. The neural ideal is an algebraic object that encodes the full combinatorial data of a neural code. This ideal can be expressed in a canonical form that directly translates to a minimal description of the receptive field structure intrinsic to the code. In here, we describe a SageMath package that contains several algorithms related to the canonical form of a neural ideal.

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(21)

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• neural ideal
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• Analysis of combinatorial neural codes: an algebraic approach
• Gröbner bases of convex neural code ideals (research)
• On spherical designs of some harmonic indices
• On the 8 case of the Sylvester conjecture
• Nondegenerate Neural Codes and Obstructions to Closed-Convexity
• A Note On a Prey-Predator Model with Constant-Effort Harvesting
• Canonical forms of neural ideals

Describes a project that uses

Uses Software

• SageMath

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