Dependent shrink of transitions for calculating firing frequencies in signaling pathway Petri net model

DOI10.3390/A10010004zbMATH Open1461.68137OpenAlexW2562632470MaRDI QIDQ1662584FDOQ1662584

Authors Atsushi Mizuta, Qi-Wei Ge, Hiroshi Matsuno 

Publication date 20 August 2018

Published in Algorithms (Search for Journal in Brave)

Full work available at URL https://doi.org/10.3390/a10010004

zbMATH Keywords

Petri netsignaling pathwaydependency relationdependent shrinkretention-free Petri net

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Recommendations

• Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
• Estimation of the firing frequencies in discrete and continuous Petri nets models
• Applications and Theory of Petri Nets 2004
• Quantitative evaluation of time-dependent Petri nets and applications to biochemical networks
• Reconstruction of extended Petri nets from time-series data by using logical control functions

Cites Work

• scientific article; zbMATH DE number 3722109 (Why is no real title available?)
• scientific article; zbMATH DE number 1950565 (Why is no real title available?)
• Applications and Theory of Petri Nets 2004
• Discrete, Continuous, and Hybrid Petri Nets
• Executable Petri net models for the analysis of metabolic pathways
• The Petri net markup language
• Time Petri nets for modelling and analysis of biochemical networks

Uses Software

• PNML
• TRANSPATH

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