Modelling of biochemical reactions by stochastic automata networks

DOI10.1016/J.ENTCS.2007.05.017zbMATH Open1277.68215OpenAlexW2033164556MaRDI QIDQ2864207FDOQ2864207

Authors: Verena Wolf 

Publication date: 6 December 2013

Published in: Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.entcs.2007.05.017

Recommendations

• The modeling and analysis of biochemical reaction systems
• Publication:4945339
• Stochastic modelling for systems biology.
• Bio-PEPA: A framework for the modelling and analysis of biological systems
• Model Reconstruction for Moment-Based Stochastic Chemical Kinetics

zbMATH Keywords

Markov chainbiochemical reactionsstochastic automata networks

Mathematics Subject Classification ID

Formal languages and automata (68Q45) Biochemistry, molecular biology (92C40) Probability in computer science (algorithm analysis, random structures, phase transitions, etc.) (68Q87) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Cites Work

• Title not available (Why is that?)
• Formal molecular biology
• Stochastic approaches for modelling in vivo reactions
• A stochastic automata network descriptor for Markov chain models of instantaneously coupled intracellular Ca\(^{2+}\) channels
• Transactions on Computational Systems Biology IV
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• Title not available (Why is that?)
• Applications and Theory of Petri Nets 2004
• Title not available (Why is that?)

Cited In (14)

• An improved robust delay-dependent stability criterion for genetic regulatory networks with interval time delays
• Automated generation of conditional moment equations for stochastic reaction networks
• Semi-quantitative abstraction and analysis of chemical reaction networks
• Emulating cellular automata in chemical reaction-diffusion networks
• Complexity results for autocatalytic network models
• Modelling biochemical reaction systems by stochastic differential equations with reflection
• Title not available (Why is that?)
• Stochastic Semantics of Signaling as a Composition of Agent-view Automata
• Reaction-based models of biochemical networks
• Computational Probability for Systems Biology
• Hybrid representation and simulation of stiff biochemical networks
• Title not available (Why is that?)
• A stochastic automata network description for spatial DNA-methylation models
• Teaching Concurrency Concepts to Freshmen

Uses Software

• PEPS
• APNN-Toolbox
• PEPA

This page was built for publication: Modelling of biochemical reactions by stochastic automata networks

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2864207)