Stochastic approaches for modelling in vivo reactions
From MaRDI portal
Publication:2490589
DOI10.1016/j.compbiolchem.2004.05.001zbMath1087.92035WikidataQ35839683 ScholiaQ35839683MaRDI QIDQ2490589
Kevin Burrage, Santiago Schnell, T. E. Turner
Publication date: 16 May 2006
Published in: Computational Biology and Chemistry (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2004.05.001
\(\tau\)-leap method; Fractal-like kinetics; Intracellular reactions; Quasi-steady-state approximation; Stochastic simulation algorithm
65C05: Monte Carlo methods
60G35: Signal detection and filtering (aspects of stochastic processes)
92C45: Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.)
92C40: Biochemistry, molecular biology
92C37: Cell biology
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Cites Work
- Enzyme kinetics at high enzyme concentration
- Enzyme kinetics far from the standard quasi-steady-state and equilibrium approximations
- Bistability and switching in the lysis/lysogeny genetic regulatory network of bacteriophage \(\lambda\)
- Brownian motion in a field of force and the diffusion model of chemical reactions
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