Accelerated leap methods for simulating discrete stochastic chemical kinetics
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Publication:3437544
zbMATH Open1132.93345MaRDI QIDQ3437544FDOQ3437544
Authors: Kevin Burrage, Shev mac, Tianhai Tian 
Publication date: 9 May 2007
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continuous-time Markov processGillespie stochastic simulation algorithmPoisson and binomial \(\tau\)-leap methods
Positive matrices and their generalizations; cones of matrices (15B48) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Stochastic systems in control theory (general) (93E03)
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- IMPLICIT SIMULATION METHODS FOR STOCHASTIC CHEMICAL KINETICS
- \(S\)-leaping: an adaptive, accelerated stochastic simulation algorithm, bridging \(\tau\)-leaping and \(R\)-leaping
- Algebraic expressions of conditional expectations in gene regulatory networks
- Efficient unbiased \(\tau\)-leap methods for simulating coupled chemical reactions
- Hybrid framework for the simulation of stochastic chemical kinetics
- Accelerated stochastic simulation algorithm for coupled chemical reactions with delays
- Effective stochastic simulation methods for chemical reaction systems
- An effective stepsize selection procedure for discrete simulation of biochemical reaction systems
- Stochastic approaches for modelling in vivo reactions
- A new look at the chemical master equation
- An accelerated method for simulating population dynamics
- Solving stochastic chemical kinetics by metropolis-Hastings sampling
- \(L\)-leap: Accelerating the stochastic simulation of chemically reacting systems
- Discrete-time stochastic modeling and simulation of biochemical networks
- Non-nested adaptive timesteps in multilevel Monte Carlo computations
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