Accelerated stochastic simulation algorithm for coupled chemical reactions with delays

DOI10.1016/J.COMPBIOLCHEM.2008.03.007MaRDI QIDQ1004915zbMATH OpenOpenAlexWikidataFDO

Authors Wen Zhou, Xin-Jun Peng, Zheng-Lou Yan, Yifei Wang

Publication date 12 March 2009

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2008.03.007

zbMATH Keywords

chemically reacting systemdelay final all possible steps approachdelay stochastic simulation algorithm

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Probabilistic models, generic numerical methods in probability and statistics (65C20) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Classical flows, reactions, etc. in chemistry (92E20)

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Cited in

(10)

• D-leaping: accelerating stochastic simulation algorithms for reactions with delays
• An evaluation of the Gauss-Radau algorithm for the simulation of chemical dynamics
• The DFAPS-leaping algorithm for the biochemical reaction systems with delays
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• Simulating stochasticities in chemical reactions with deterministic delay differential equations
• A new approach to simulating stochastic delayed systems
• Approximation of delays in biochemical systems
• The nondeterministic waiting time algorithm: a review
• ``Final all possible steps approach for accelerating stochastic simulation of coupled chemical reactions
• Delay chemical master equation: direct and closed-form solutions

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