A new approach to simulating stochastic delayed systems
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This paper considers a formulation for deriving stochastic delay differential equations that are equivalent in distribution to delay chemical master equations, that describe the probability distribution of delayed chemical reactions. Two simple test models involving two reacting chemical species are considered: one with five reactions with two delayed, and the other with a bistable property. Simulation results are compared with direct delay stochastic simulations via the DSSA, showing excellent performance with respect to both computational efficiency and accuracy.
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Cites work
- A stochastic model of schistosomiasis immuno-epidemiology
- An epidemiological model with a delay and a nonlinear incidence rate
- An Introduction to Stochastic Epidemic Models
- Comparison of Markov chain and stochastic differential equation population models under higher-order moment closure approximations
- Construction of Equivalent Stochastic Differential Equation Models
- Delay chemical master equation: direct and closed-form solutions
- Handbook of stochastic methods for physics, chemistry and the natural sciences.
- scientific article; zbMATH DE number 4067100 (Why is no real title available?)
- scientific article; zbMATH DE number 51361 (Why is no real title available?)
- scientific article; zbMATH DE number 3626983 (Why is no real title available?)
- scientific article; zbMATH DE number 747050 (Why is no real title available?)
- scientific article; zbMATH DE number 3806623 (Why is no real title available?)
- Kramers-Moyal expansion for stochastic differential equations with single and multiple delays: applications to financial physics and neurophysics
- Modeling with Itô Stochastic Differential Equations
- Numerical solution of stochastic models of biochemical kinetics
- Stochastic delay differential equations for genetic regulatory networks
- Stochastic description of delayed systems
- Stochastic epidemic models: a survey
- Stochastic models for virus and immune system dynamics
- Stochastic population models. A compartmental perspective
- Strong Predictor-Corrector Approximation for Stochastic Delay Differential Equations
- Sustained oscillations via coherence resonance in SIR
- The Fokker-Planck equation. Methods of solution and applications.
Cited in
(16)- Exponential distributed time-delay nonlinear models: Monte Carlo simulations
- Stochastic hybrid automata with delayed transitions to model biochemical systems with delays
- Stochastic description of delayed systems
- Delay stochastic simulation of biological systems: a purely delayed approach
- Oritatami System; a Survey and the Impossibility of Simple Simulation at Small Delays
- Ergodic approximation to chemical reaction system with delay
- Derivation and computation of discrete-delay and continuous-delay SDEs in mathematical biology
- Time-delayed and stochastic effects in a predator-prey model with ratio dependence and Holling type III functional response
- Algorithms for linear stochastic delay differential equations
- Delay chemical master equation: direct and closed-form solutions
- Simulating stochasticities in chemical reactions with deterministic delay differential equations
- Stochastic fluctuations as a driving force to dissipative non-equilibrium states
- Assessing Markovian and delay models for single-nucleus RNA sequencing
- A new approach to simulating stochastic delayed systems
- Noise and delay can shape distribution functions in stochastic reaction dynamics
- D-leaping: accelerating stochastic simulation algorithms for reactions with delays
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