Assessing Markovian and delay models for single-nucleus RNA sequencing

DOI10.1007/S11538-023-01213-9MaRDI QIDQ6084611zbMATH OpenFDO

Authors Gennady Gorin, Shawn Yoshida, Lior Pachter

Publication date 6 November 2023

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/S11538-023-01213-9

zbMATH Keywords

chemical master equationsdelay processesMarkov chain Monte Carlomodel identificationsingle-cell RNA sequencingstochastic simulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

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• Effects of elongation delay in transcription dynamics
• Gene expression distribution deconvolution in single-cell RNA sequencing
• Handbook of stochastic methods for physics, chemistry and the natural sciences.
• scientific article; zbMATH DE number 3626983 (Why is no real title available?)
• Interplay of cellular states: role of delay as control mechanism
• Markovian approaches to modeling intracellular reaction processes with molecular memory
• Markovian modelling of gene product synthesis
• Modulation of nuclear and cytoplasmic mRNA fluctuations by time-dependent stimuli: analytical distributions
• Oscillatory expression and variability in p53 regulatory network
• Stochastic delay differential equations for genetic regulatory networks
• Stochastic gene expression with a multistate promoter: breaking down exact distributions
• Stochastic models of gene expression with delayed degradation
• Stochastic processes in physics and chemistry.

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