A multiple time interval finite state projection algorithm for the solution to the chemical master equation
From MaRDI portal
Publication:2456722
Recommendations
- An improved finite state projection algorithm for the numerical solution of the chemical master equation with applications
- Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
- Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation
- Simultaneous state-time approximation of the chemical master equation using tensor product formats.
- Approximate exponential algorithms to solve the chemical master equation
- Accurate chemical master equation solution using multi-finite buffers
- On the use of proper generalized decompositions for solving the multidimensional chemical master equation
- A graph-based approach for the approximate solution of the chemical master equation
- Structure-preserving discretization of the chemical master equation
Cites work
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Stochastic approach to chemical kinetics
- Stochastic modelling of gene regulatory networks
- Stochastic processes in physics and chemistry.
Cited in
(56)- Modeling of chemical reaction systems with detailed balance using gradient structures
- Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
- Stochastic reaction networks in dynamic compartment populations
- Model-free reinforcement learning for branching Markov decision processes
- Stochastically modeled weakly reversible reaction networks with a single linkage class
- Data-driven method for efficient characterization of rare event probabilities in biochemical systems
- Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment
- Analyzing oscillatory behavior with formal methods
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- On evolution of solution times for the chemical master equation of the enzymatic futile cycle
- Algebraic expressions of conditional expectations in gene regulatory networks
- Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation
- Exponential equilibration of genetic circuits using entropy methods
- Computing cumulative rewards using fast adaptive uniformization
- A review of stochastic and delay simulation approaches in both time and space in computational cell biology
- A modified uniformization method for the solution of the chemical master equation
- Jump longer to jump less: improving dynamic boundary projection with \(h\)-scaling
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Variance reduction in stochastic reaction networks using control variates
- Method of conditional moments (MCM) for the chemical master equation
- Analysis of Markov jump processes under terminal constraints
- State space truncation with quantified errors for accurate solutions to discrete chemical master equation
- A numerical characteristic method for probability generating functions on stochastic first-order reaction networks
- Tensor numerical methods for multidimensional PDEs: theoretical analysis and initial applications
- Hybrid models of chemotaxis with application to leukocyte migration
- A tensor decomposition algorithm for large ODEs with conservation laws
- Generalizing Gillespie's direct method to enable network-free simulations
- Conditional Monte Carlo for reaction networks
- Approximate exponential algorithms to solve the chemical master equation
- Hybrid discrete/continuum algorithms for stochastic reaction networks
- Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation
- General solution of the chemical master equation and modality of marginal distributions for hierarchic first-order reaction networks
- Computational identification of irreducible state-spaces for stochastic reaction networks
- Markovian dynamics on complex reaction networks
- Parallelising the finite state projection method
- Krylov and steady-state techniques for the solution of the chemical master equation for the mitogen-activated protein kinase cascade
- Simultaneous state-time approximation of the chemical master equation using tensor product formats.
- A shift and invert reorthogonalization Arnoldi algorithm for solving the chemical master equation
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
- Assessing Markovian and delay models for single-nucleus RNA sequencing
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- The exit time finite state projection scheme: bounding exit distributions and occupation measures of continuous-time Markov chains
- Tensor approximation of stationary distributions of chemical reaction networks
- A dynamical low-rank approach to the chemical master equation
- Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations
- Structure-preserving discretization of the chemical master equation
- Unbiased Bayesian inference for population Markov jump processes via random truncations
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Spatial stochastic intracellular kinetics: a review of modelling approaches
- Multiscale stochastic modelling of gene expression
- The efficient computation of periodic states of cyclically operated chemical processes
- A solver for the stochastic master equation applied to gene regulatory networks
- Accurate chemical master equation solution using multi-finite buffers
- Analytical Time-Dependent Distributions for Gene Expression Models With Complex Promoter Switching Mechanisms
- An improved finite state projection algorithm for the numerical solution of the chemical master equation with applications
- Nonlinear Langevin model with product stochasticity for biological networks: the case of the Schnakenberg model
This page was built for publication: A multiple time interval finite state projection algorithm for the solution to the chemical master equation
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2456722)
