Markovian approaches to modeling intracellular reaction processes with molecular memory
DOI10.1073/PNAS.1913926116zbMATH Open1431.92045OpenAlexW2985088907WikidataQ91104646 ScholiaQ91104646MaRDI QIDQ5218488FDOQ5218488
Authors: Jiajun Zhang, Tianshou Zhou 
Publication date: 4 March 2020
Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1073/pnas.1913926116
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Biochemistry, molecular biology (92C40) Interacting particle systems in time-dependent statistical mechanics (82C22) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)
Cited In (18)
- A class of collision processes with memory and application to simple chemical reactions in a solvent
- Stochastic reaction networks in dynamic compartment populations
- Memory equations as reduced Markov processes
- Protein pattern formation induced by the joint effect of noise and delay in a multi-cellular system
- Modelling non-Markovian fluctuations in intracellular biomolecular transport
- Kinetic characteristics of transcriptional bursting in a complex gene model with cyclic promoter structure
- Analysis of a non-Markov transcription model with nuclear RNA export and RNA nuclear retention
- The dynamics of gene transcription Induced by variation in transcription kinetics
- Analysis of non-Markovian effects in generalized birth-death models
- Memory-induced bifurcation and oscillations in the chemical Brusselator model
- Memory effects in biochemical networks as the natural counterpart of extrinsic noise
- Phase separation reduces cell-to-cell variability of transcriptional bursting
- Modeling stochastic gene expression: from Markov to non-Markov models
- Assessing Markovian and delay models for single-nucleus RNA sequencing
- Postponing production exponentially enhances the molecular memory of a stochastic switch
- Optimal switching paths of a non-Markovian model of gene bursty expression
- Noise and delay can shape distribution functions in stochastic reaction dynamics
- Adaptive-step methods for Markov-based membrane models
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