Efficient unbiased -leap methods for simulating coupled chemical reactions

MaRDI QIDQ3572287zbMATH OpenFDO

Authors Yifei Wang, Xin-Jun Peng

Publication date 8 July 2010

zbMATH Keywords

chemically reacting systemsefficient unbiased \(\tau\)-leap methodefficient unbiased delay \(\tau\)-leap methodleap algorithms

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Classical flows, reactions, etc. in chemistry (92E20)

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Cited in

(8)

• D-leaping: accelerating stochastic simulation algorithms for reactions with delays
• \(S\)-leaping: an adaptive, accelerated stochastic simulation algorithm, bridging \(\tau\)-leaping and \(R\)-leaping
• Exploring the performance of spatial stochastic simulation algorithms
• The DFAPS-leaping algorithm for the biochemical reaction systems with delays
• An effective stepsize selection procedure for discrete simulation of biochemical reaction systems
• Accelerated leap methods for simulating discrete stochastic chemical kinetics
• \(L\)-leap: Accelerating the stochastic simulation of chemically reacting systems
• ``Final all possible steps approach for accelerating stochastic simulation of coupled chemical reactions

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