Discrete-time stochastic modeling and simulation of biochemical networks

DOI10.1016/j.compbiolchem.2008.03.018zbMath1158.92018WikidataQ51878159 ScholiaQ51878159MaRDI QIDQ1004937

Werner Sandmann

Publication date: 12 March 2009

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2008.03.018

zbMATH Keywords

stochastic modeling; uniformization; stochastic simulation; biochemical networks; chemical master equation; discrete-time Markov chain

Mathematics Subject Classification ID

60J10: Markov chains (discrete-time Markov processes on discrete state spaces)

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92C40: Biochemistry, molecular biology

60J27: Continuous-time Markov processes on discrete state spaces

Related Items

Approximation of event probabilities in noisy cellular processes, Stochastic modelling of the eukaryotic heat shock response, Approximate adaptive uniformization of continuous-time Markov chains, Computational Probability for Systems Biology

Cites Work

• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
• Stochastic approaches for modelling in vivo reactions
• Randomization Procedures in the Computation of Cumulative-Time Distributions over Discrete State Markov Processes
• Discrete time methods for simulating continuous time Markov chains
• Stochastic approach to chemical kinetics
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