Discrete-time stochastic modeling and simulation of biochemical networks

DOI10.1016/J.COMPBIOLCHEM.2008.03.018MaRDI QIDQ1004937zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Werner Sandmann

Publication date 12 March 2009

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2008.03.018

zbMATH Keywords

biochemical networkschemical master equationdiscrete-time Markov chainstochastic modelingstochastic simulationuniformization

Mathematics Subject Classification ID

Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Continuous-time Markov processes on discrete state spaces (60J27) Biochemistry, molecular biology (92C40)

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Cites work

• Discrete time methods for simulating continuous time Markov chains
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• scientific article; zbMATH DE number 729460 (Why is no real title available?)
• scientific article; zbMATH DE number 3806623 (Why is no real title available?)
• scientific article; zbMATH DE number 3082073 (Why is no real title available?)
• Randomization Procedures in the Computation of Cumulative-Time Distributions over Discrete State Markov Processes
• Stochastic approach to chemical kinetics
• Stochastic approaches for modelling in vivo reactions
• Stochastic modelling for systems biology.
• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

Cited in

(11)

• Stochastic modelling of the eukaryotic heat shock response
• Approximate adaptive uniformization of continuous-time Markov chains
• A first step to implement Gillespie's algorithm with rejection sampling
• Propagation of fluctuations in biochemical systems. I: Linear SSC networks
• Computational Probability for Systems Biology
• Hybrid representation and simulation of stiff biochemical networks
• Discrete Modeling of Biochemical Signaling with Memory Enhancement
• The nondeterministic waiting time algorithm: a review
• Approximation of event probabilities in noisy cellular processes
• scientific article; zbMATH DE number 6769232 (Why is no real title available?)
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems

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