Discrete Modeling of Biochemical Signaling with Memory Enhancement

DOI10.1007/978-3-642-04186-0_10MaRDI QIDQ3642957zbMATH OpenOpenAlexFDO

Authors John Jack, Andrei Păun

Publication date 10 November 2009

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-04186-0_10

zbMATH Keywords

circadian rhythms modelGillespie algorithmLotka-Volterra predator-prey modelordinary differential equations

Mathematics Subject Classification ID

Qualitative investigation and simulation of ordinary differential equation models (34C60) Computational methods for problems pertaining to biology (92-08) Biological rhythms and synchronization (92B25) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Ecology (92D40)

Recommendations

• The nondeterministic waiting time algorithm: a review
• DISCRETE NONDETERMINISTIC MODELING OF THE FAS PATHWAY
• Discrete-time stochastic modeling and simulation of biochemical networks
• A multi-stage representation of cell proliferation as a Markov process
• D-leaping: accelerating stochastic simulation algorithms for reactions with delays

Cites work

• DISCRETE NONDETERMINISTIC MODELING OF THE FAS PATHWAY
• Simulating FAS-induced apoptosis by using P systems

Cited in

(4)

• DISCRETE NONDETERMINISTIC MODELING OF THE FAS PATHWAY
• scientific article; zbMATH DE number 6108723 (Why is no real title available?)
• Computational power of cell separation in tissue P systems
• The nondeterministic waiting time algorithm: a review

Describes a project that uses

Uses Software

• Celldesigner
• COPASI

This page was built for publication: Discrete Modeling of Biochemical Signaling with Memory Enhancement

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3642957)