Petri net models for the semi-automatic construction of large scale biological networks

DOI10.1007/S11047-009-9151-YzbMATH Open1251.92012OpenAlexW2051706138MaRDI QIDQ1761685FDOQ1761685

Authors: Ming Chen, Sridhar Hariharaputran, Ralf Hofestädt, Benjamin Kormeier 

Publication date: 15 November 2012

Published in: Natural Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11047-009-9151-y

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zbMATH Keywords

data integrationmodel constructioncardio-disease networksfunctional Petri netsMoVisPP

Mathematics Subject Classification ID

Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Cites Work

• Applications and Theory of Petri Nets 2004
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• Applications and Theory of Petri Nets 2005
• Executable Petri net models for the analysis of metabolic pathways
• Title not available (Why is that?)
• Boundary formation by notch signaling in drosophila multicellular systems: eperimental observations and gene network modeling by genomic object net
• Title not available (Why is that?)

Cited In (13)

• Title not available (Why is that?)
• Title not available (Why is that?)
• A Petri-net-based framework for biomodel engineering
• Petri nets formalism facilitates analysis of complex biomolecular structural data
• How Petri nets might enhance your systems biology toolkit
• Petri Nets for Modelling and Analysing Trophic Networks
• Integrating Petri nets and flux balance methods in computational biology models: a methodological and computational practice
• MoVisPP
• Setting parameters for biological models with ANIMO
• Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
• Preface
• Design Issues for Qualitative Modelling of Biological Cells with Petri Nets
• Tissue Systems and Petri Net Synthesis

Uses Software

• SCAMP
• SNOOPY
• Stella
• GEPASI
• E-CELL
• COPASI
• KEGG
• Bio-SPICE
• Virtual Cell
• VisANT

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