Petri net models for the semi-automatic construction of large scale biological networks

DOI10.1007/S11047-009-9151-YMaRDI QIDQ1761685zbMATH OpenOpenAlexFDO

Authors Ming Chen, Sridhar Hariharaputran, Ralf Hofestädt, Benjamin Kormeier

Publication date 15 November 2012

Published in Natural Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11047-009-9151-y

zbMATH Keywords

data integrationmodel constructioncardio-disease networksfunctional Petri netsMoVisPP

Mathematics Subject Classification ID

Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

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• scientific article; zbMATH DE number 1950565

Cites work

• scientific article; zbMATH DE number 3646295 (Why is no real title available?)
• scientific article; zbMATH DE number 53942 (Why is no real title available?)
• scientific article; zbMATH DE number 1045365 (Why is no real title available?)
• scientific article; zbMATH DE number 1950565 (Why is no real title available?)
• scientific article; zbMATH DE number 814403 (Why is no real title available?)
• Applications and Theory of Petri Nets 2004
• Applications and Theory of Petri Nets 2005
• Boundary formation by notch signaling in drosophila multicellular systems: eperimental observations and gene network modeling by genomic object net
• Executable Petri net models for the analysis of metabolic pathways

Cited in

(13)

• Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
• scientific article; zbMATH DE number 1950565 (Why is no real title available?)
• Petri nets formalism facilitates analysis of complex biomolecular structural data
• Petri Nets for Modelling and Analysing Trophic Networks
• Design Issues for Qualitative Modelling of Biological Cells with Petri Nets
• scientific article; zbMATH DE number 1950561 (Why is no real title available?)
• MoVisPP
• How Petri nets might enhance your systems biology toolkit
• Tissue Systems and Petri Net Synthesis
• Integrating Petri nets and flux balance methods in computational biology models: a methodological and computational practice
• Setting parameters for biological models with ANIMO
• A Petri-net-based framework for biomodel engineering
• Preface

Describes a project that uses

Uses Software

• SCAMP
• SNOOPY
• Stella
• GEPASI
• E-CELL
• COPASI
• KEGG
• Bio-SPICE
• Virtual Cell
• VisANT

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