Petri nets formalism facilitates analysis of complex biomolecular structural data

DOI10.1051/ro/2015043zbMath1338.90078WikidataQ108529268 ScholiaQ108529268MaRDI QIDQ2805502

Wiesław Nowak, Anna Gogolińska, Rafal Jakubowski

Publication date: 11 May 2016

Published in: RAIRO - Operations Research (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1051/ro/2015043

zbMATH Keywords

clustering; graphs; data mining; Petri net; molecular dynamic simulations; conformational space

Mathematics Subject Classification ID

90B10: Deterministic network models in operations research

92-08: Computational methods for problems pertaining to biology

68W99: Algorithms in computer science

Uses Software

• NAMD
• Gromacs
• BioJava
• CHARMM
• VMD