Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
DOI10.1007/S11047-009-9152-XzbMATH Open1217.92048OpenAlexW2039406052MaRDI QIDQ553903FDOQ553903
Authors: Wolfgang Marwan, Robert Weismantel, Annegret K. Wagler 
Publication date: 28 July 2011
Published in: Natural Computing (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s11047-009-9152-x
Recommendations
systems biologyformal languageautomatic network reconstructionhierarchical Petri netnetwork reconstruction
Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)
Cites Work
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Cited In (26)
- Flatness and Complexity of Immediate Observation Petri Nets
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- An algorithmic framework for network reconstruction
- From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
- Applications and Theory of Petri Nets 2004
- On minimality and equivalence of Petri nets
- Parameterized Analysis of Immediate Observation Petri Nets
- Reconstructing the regulatory network controlling commitment and sporulation in \textit{Physarum polycephalum} based on hierarchical Petri net modelling and simulation
- A Petri net representation of Bayesian message flows: importance of Bayesian networks for biological applications
- Applications and Theory of Petri Nets 2004
- Executable Petri net models for the analysis of metabolic pathways
- A Petri-net-based framework for biomodel engineering
- Petri nets formalism facilitates analysis of complex biomolecular structural data
- How Petri nets might enhance your systems biology toolkit
- Dependent shrink of transitions for calculating firing frequencies in signaling pathway Petri net model
- Petri net modelling of biological regulatory networks
- Petri Nets for Modelling and Analysing Trophic Networks
- Modeling in systems biology. The Petri net approach. With a foreword of Jens Georg Reich.
- Integrating Petri nets and flux balance methods in computational biology models: a methodological and computational practice
- Reconstruction of extended Petri nets from time-series data by using logical control functions
- The complexity of verifying population protocols
- Modelling signalling networks with incomplete information about protein activation states: a P system framework of the KaiABC oscillator
- Petri nets for modelling metabolic pathways: a survey
- Petri net models for the semi-automatic construction of large scale biological networks
- Petri nets are a biologist's best friend
- Elementary network reconstruction: a framework for the analysis of regulatory networks in biological systems
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