An algorithmic framework for network reconstruction

DOI10.1016/J.TCS.2010.08.016zbMATH Open1218.68104OpenAlexW2093312553MaRDI QIDQ548474FDOQ548474

Robert Weismantel, Markus Durzinsky, Annegret K. Wagler

Publication date: 28 June 2011

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2010.08.016

zbMATH Keywords

computational biologyPetri netsreverse engineeringinteger decomposition

Mathematics Subject Classification ID

Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Cites Work

• Title not available (Why is that?)
• The combinatorics of modeling and analyzing biological systems
• A computational algebra approach to the reverse engineering of gene regulatory networks
• A mathematical approach to solve the network reconstruction problem
• Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
• Applications and Theory of Petri Nets 2004
• Reconstructing the regulatory network controlling commitment and sporulation in \textit{Physarum polycephalum} based on hierarchical Petri net modelling and simulation

Cited In (6)

• Constructing Petri net models using genetic search
• The combinatorics of modeling and analyzing biological systems
• Identification of biological transition systems using meta-interpreted logic programs
• Network Reconstruction – A New Approach to the Traveling Salesman Problem and Complexity
• Network reconstruction of social networks based on the public information
• Reconstruction of extended Petri nets from time-series data by using logical control functions

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