The combinatorics of modeling and analyzing biological systems
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Cites work
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- scientific article; zbMATH DE number 960150 (Why is no real title available?)
- A Geometric Buchberger Algorithm for Integer Programming
- A Variant of the Buchberger Algorithm for Integer Programming
- A counterexample to an integer analogue of Carathéodory's theorem
- A mathematical approach to solve the network reconstruction problem
- A new constraint-based description of the steady-state flux cone of metabolic networks
- An algorithmic framework for network reconstruction
- An integer analogue of Carathéodory's theorem
- Gröbner bases of lattices, corner polyhedra, and integer programming
- Hilbert bases, unimodular triangulations, and binary covers of rational polyhedral cones
- On minimal solutions of Diophantine equations
- Operations that preserve total dual integrality
- Production Sets with Indivisibilities, Part I: Generalities
- Total dual integrality and integer polyhedra
- Truncated Gröbner bases for integer programming
- Variation of cost functions in integer programming
Cited in
(15)- Combinatorics of Polymer-Based Models of Early Metabolism
- Deducing Interactions in Partially Unspecified Biological Systems
- scientific article; zbMATH DE number 5302728 (Why is no real title available?)
- Under-approximation of reachability in multivalued asynchronous networks
- An algorithmic framework for network reconstruction
- Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
- Combinatorial fractal geometry with a biological application
- A mathematical framework for agent based models of complex biological networks
- How Petri nets might enhance your systems biology toolkit
- Extending combinatorial regulatory network modeling to include activity control and decay modulation
- Sufficient conditions for reachability in automata networks with priorities
- On the relationship of steady states of continuous and discrete models arising from biology
- Encoding the dynamics of deterministic systems
- Reconstruction of extended Petri nets from time-series data by using logical control functions
- Inferring interactions in molecular networks via primary decompositions of monomial ideals
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