The combinatorics of modeling and analyzing biological systems
DOI10.1007/S11047-009-9165-5zbMATH Open1217.92050OpenAlexW2091540284MaRDI QIDQ553904FDOQ553904
Authors: Robert Weismantel, Annegret K. Wagler
Publication date: 28 July 2011
Published in: Natural Computing (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s11047-009-9165-5
Recommendations
- Selected combinatorial problems of computational biology
- Algebraic and combinatorial computational biology
- scientific article; zbMATH DE number 2151174
- scientific article; zbMATH DE number 863508
- Modeling life. The mathematics of biological systems
- Systems biology. Mathematical modeling and model analysis
- Mathematical methods in systems biology
- Modeling and analysis of bio-molecular networks
- Mathematical and physical modeling principles of complex biological systems
modeling interaction networksreconstructing models from experimental datasteady-state analysis in Petri nets
Combinatorial optimization (90C27) Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)
Cites Work
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- A new constraint-based description of the steady-state flux cone of metabolic networks
- Production Sets with Indivisibilities, Part I: Generalities
- An integer analogue of Carathéodory's theorem
- A counterexample to an integer analogue of Carathéodory's theorem
- Variation of cost functions in integer programming
- Gröbner bases of lattices, corner polyhedra, and integer programming
- A Geometric Buchberger Algorithm for Integer Programming
- A Variant of the Buchberger Algorithm for Integer Programming
- A mathematical approach to solve the network reconstruction problem
- An algorithmic framework for network reconstruction
- Total dual integrality and integer polyhedra
- Hilbert bases, unimodular triangulations, and binary covers of rational polyhedral cones
- Truncated Gröbner bases for integer programming
- Operations that preserve total dual integrality
- On minimal solutions of Diophantine equations
- Title not available (Why is that?)
Cited In (15)
- Deducing Interactions in Partially Unspecified Biological Systems
- Title not available (Why is that?)
- Under-approximation of reachability in multivalued asynchronous networks
- An algorithmic framework for network reconstruction
- Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
- Combinatorial fractal geometry with a biological application
- A mathematical framework for agent based models of complex biological networks
- How Petri nets might enhance your systems biology toolkit
- Extending combinatorial regulatory network modeling to include activity control and decay modulation
- Sufficient conditions for reachability in automata networks with priorities
- On the relationship of steady states of continuous and discrete models arising from biology
- Inferring interactions in molecular networks via primary decompositions of monomial ideals
- Reconstruction of extended Petri nets from time-series data by using logical control functions
- Encoding the dynamics of deterministic systems
- Combinatorics of Polymer-Based Models of Early Metabolism
This page was built for publication: The combinatorics of modeling and analyzing biological systems
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q553904)