From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
DOI10.1007/11767589_11zbMATH Open1234.68298DBLPconf/apn/GilbertH06OpenAlexW1786236181WikidataQ63241845 ScholiaQ63241845MaRDI QIDQ3618705FDOQ3618705
Authors: David Gilbert, Monika Heiner 
Publication date: 2 April 2009
Published in: Petri Nets and Other Models of Concurrency - ICATPN 2006 (Search for Journal in Brave)
Full work available at URL: http://eprints.gla.ac.uk/3476/1/gilbert.3476.pdf
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Biochemistry, molecular biology (92C40) Packaged methods for numerical algorithms (65Y15) Numerical methods for ordinary differential equations (65L99) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)
Cited In (16)
- IDD-based model validation of biochemical networks
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- Two wrongs do not make a right: the assumption that an inhibitor acts as an inverse activator
- Time Petri nets for modelling and analysis of biochemical networks
- Individuals, populations and fluid approximations: a Petri net based perspective
- How Petri nets might enhance your systems biology toolkit
- A Petri net approach to the study of persistence in chemical reaction networks
- Petri Nets for Modelling and Analysing Trophic Networks
- A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models
- Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
- Hybrid representation and simulation of stiff biochemical networks
- Petri nets for modelling metabolic pathways: a survey
- Hybrid Petri net based modeling for biological pathway simulation
- Modeling biological gradient formation: combining partial differential equations and Petri nets
- Charlie -- an extensible Petri net analysis tool
- Preface
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