From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis

DOI10.1007/11767589_11zbMath1234.68298OpenAlexW1786236181WikidataQ63241845 ScholiaQ63241845MaRDI QIDQ3618705

David Gilbert, Monika Heiner

Publication date: 2 April 2009

Published in: Petri Nets and Other Models of Concurrency - ICATPN 2006 (Search for Journal in Brave)

Full work available at URL: http://eprints.gla.ac.uk/3476/1/gilbert.3476.pdf

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Packaged methods for numerical algorithms (65Y15) Numerical methods for ordinary differential equations (65L99)

Related Items (11)

Individuals, populations and fluid approximations: a Petri net based perspective ⋮ Hybrid representation and simulation of stiff biochemical networks ⋮ Charlie – An Extensible Petri Net Analysis Tool ⋮ Petri nets for modelling metabolic pathways: a survey ⋮ Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights ⋮ A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models ⋮ How Might Petri Nets Enhance Your Systems Biology Toolkit ⋮ A Petri net approach to the study of persistence in chemical reaction networks ⋮ Hybrid Petri net based modeling for biological pathway simulation ⋮ IDD-based model validation of biochemical networks ⋮ Modeling biological gradient formation: combining partial differential equations and Petri nets

Uses Software

• GEPASI

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