Modeling biological gradient formation: combining partial differential equations and Petri nets

DOI10.1007/s11047-015-9531-4zbMath1417.92041DBLPjournals/nc/BertensKHHKV16OpenAlexW2114989670WikidataQ42371862 ScholiaQ42371862MaRDI QIDQ2311279

Maciej Koutny, H. C. M. Kleijn, Laura M. F. Bertens, Monika Heiner, Fons J. Verbeek, Sander Cornelis Hille

Publication date: 10 July 2019

Published in: Natural Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11047-015-9531-4

zbMATH Keywords

partial differential equationPetri netquantitative modelingprocess validationgradient formation

Mathematics Subject Classification ID

PDEs in connection with biology, chemistry and other natural sciences (35Q92) Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Uses Software

• SNOOPY

Cites Work

• Modeling in systems biology. The Petri net approach. With a foreword of Jens Georg Reich.
• Lectures on Petri nets. 1: Basic models. Advances in Petri nets
• Partial order semantics and read arcs
• Contextual nets
• Design Issues for Qualitative Modelling of Biological Cells with Petri Nets
• From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
• Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology
• Lectures on Concurrency and Petri Nets
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