Colouring space -- a coloured framework for spatial modelling in systems biology

DOI10.1007/978-3-642-38697-8_13zbMATH Open1381.92035OpenAlexW67242188WikidataQ57976119 ScholiaQ57976119MaRDI QIDQ5300874FDOQ5300874

Authors:

Publication date: 28 June 2013

Published in: Application and Theory of Petri Nets and Concurrency (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-38697-8_13

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zbMATH Keywords

stochasticsystems biologycoloured Petri netscontinuoushybrid Petri netsqualitativespatial modellingbiomolecular networksbiomodel engineering

Mathematics Subject Classification ID

Systems biology, networks (92C42) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Cited In (6)

• Chromar, a rule-based language of parameterised objects
• Chromar, a language of parameterised agents
• Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
• A generalized neighborhood for cellular automata
• Modeling biological gradient formation: combining partial differential equations and Petri nets
• Petri-net-based 2D design of DNA walker circuits

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