Chromar, a language of parameterised agents

DOI10.1016/J.TCS.2017.07.034MaRDI QIDQ2422011zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Ricardo Honorato-Zimmer, Andrew J. Millar, Gordon D. Plotkin, Argyris Zardilis

Publication date 18 June 2019

Published in Theoretical Computer Science (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1016/j.tcs.2017.07.034

zbMATH Keywords

systems biologystochastic rulesplant growth modelsrule-based modellingArabidopsis thalianacarbon partitioningrepresentation of reactions

Mathematics Subject Classification ID

Theory of programming languages (68N15) Systems biology, networks (92C42) Agent technology and artificial intelligence (68T42) Plant biology (92C80)

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Cites work

• scientific article; zbMATH DE number 4028914 (Why is no real title available?)
• An intermediate language for the stochastic simulation of biological systems
• Biochemical reaction rules with constraints
• Colouring space -- a coloured framework for spatial modelling in systems biology
• First-order intensional logic
• Fold and unfold for program semantics
• Pure bigraphs: structure and dynamics
• Rule-Based Modelling of Cellular Signalling
• Rule-Based Modelling, Symmetries, Refinements
• Stochastic bigraphs
• Stochastic process semantics for dynamical grammars
• The compiler forest

Cited in

(1)

• Nonlinear pattern matching in rule-based modeling languages

Describes a project that uses

Uses Software

• PySB
• BioNetGen
• SNOOPY
• Haskell
• APL

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