A Petri net approach to the study of persistence in chemical reaction networks
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Publication:2480002
DOI10.1016/J.MBS.2007.07.003zbMATH Open1133.92322arXivq-bio/0608019OpenAlexW2123910740WikidataQ51905868 ScholiaQ51905868MaRDI QIDQ2480002FDOQ2480002
Patrick De Leenheer, David Angeli, Eduardo D. Sontag
Publication date: 28 March 2008
Published in: Mathematical Biosciences (Search for Journal in Brave)
Abstract: Persistency is the property, for differential equations in , that solutions starting in the positive orthant do not approach the boundary. For chemical reactions and population models, this translates into the non-extinction property: provided that every species is present at the start of the reaction, no species will tend to be eliminated in the course of the reaction. This paper provides checkable conditions for persistence of chemical species in reaction networks, using concepts and tools from Petri net theory. Nontrivial examples are provided to illustrate the theory.
Full work available at URL: https://arxiv.org/abs/q-bio/0608019
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Applications of graph theory (05C90) Directed graphs (digraphs), tournaments (05C20) Dynamical systems in biology (37N25) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Classical flows, reactions, etc. in chemistry (92E20)
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