DOI10.1016/j.mbs.2007.07.003zbMath1133.92322arXivq-bio/0608019OpenAlexW2123910740WikidataQ51905868 ScholiaQ51905868MaRDI QIDQ2480002
Patrick De Leenheer, Eduardo D. Sontag, David Angeli
Publication date: 28 March 2008
Published in: Mathematical Biosciences (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/q-bio/0608019
Some consequences of thermodynamic feasibility for chemical reaction networks. Considering thermodynamic feasibility in current CRN research ⋮
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Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates ⋮
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Graphical characterizations of robust stability in biological interaction networks ⋮
On the relation between \(\omega \)-limit set and boundaries of mass-action chemical reaction networks ⋮
Parameterized Analysis of Immediate Observation Petri Nets ⋮
Catalysis in reaction networks ⋮
Chemical reaction systems with toric steady states ⋮
Problematic configurations and choice-join pairs on Mono-T-Semiflow nets: towards the characterization of behavior-structural properties ⋮
Source-Only Realizations, Weakly Reversible Deficiency One Networks, and Dynamical Equivalence ⋮
Conservation Laws in Biochemical Reaction Networks ⋮
A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks ⋮
A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems ⋮
Chemical reaction-diffusion networks: convergence of the method of lines ⋮
On the existence of the positive steady states of weakly reversible deficiency-one mass action systems ⋮
Complex Balancing Reconstructed to the Asymptotic Stability of Mass-Action Chemical Reaction Networks with Conservation Laws ⋮
Linear conjugacy of chemical reaction networks ⋮
Computational Complexity of Atomic Chemical Reaction Networks ⋮
Stochastic switching in biology: from genotype to phenotype ⋮
Translated chemical reaction networks ⋮
Persistence In Chemical Reaction Networks With Arbitrary Time Delays ⋮
Engineering model reduction and entropy-based Lyapunov functions in chemical reaction kinetics ⋮
A tutorial on chemical reaction network dynamics ⋮
Boundedness of trajectories for weakly reversible, single linkage class reaction systems ⋮
Reachability, persistence, and constructive chemical reaction networks. I: Reachability approach to the persistence of chemical reaction networks ⋮
Reachability, persistence, and constructive chemical reaction networks. III: A mathematical formalism for binary enzymatic networks and application to persistence ⋮
Algebra and Geometry in the Study of Enzymatic Cascades ⋮
Autocatalysis in reaction networks ⋮
The Inheritance of Nondegenerate Multistationarity in Chemical Reaction Networks ⋮
On the number of steady states in a multiple futile cycle ⋮
Directed reachability for infinite-state systems ⋮
How Might Petri Nets Enhance Your Systems Biology Toolkit ⋮
A computational approach to extinction events in chemical reaction networks with discrete state spaces ⋮
A stratum approach to global stability of complex balanced systems ⋮
Intermediates, catalysts, persistence, and boundary steady states ⋮
On the Liouville integrability of Edelstein's reaction system in \(\mathbb R^3\) ⋮
Graphical methods for analysing feedback in biological networks – A survey ⋮
How far is complex balancing from detailed balancing? ⋮
Boundedness analysis for open chemical reaction networks with mass-action kinetics ⋮
Siphons in chemical reaction networks ⋮
Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models ⋮
Inheritance of oscillation in chemical reaction networks ⋮
Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks ⋮
Quasi-toric differential inclusions ⋮
Dynamical properties of discrete reaction networks ⋮
Homotopy methods for counting reaction network equilibria ⋮
Some Results on Injectivity and Multistationarity in Chemical Reaction Networks ⋮
On necessary and sufficient conditions for proto-cell stationary growth ⋮
Endotactic Networks and Toric Differential Inclusions ⋮
The deficiency zero theorem and global asymptotic stability for a class of chemical reaction networks with arbitrary time delays ⋮
Deficiency Zero Petri Nets and Product Form ⋮
Flatness and Complexity of Immediate Observation Petri Nets ⋮
Dual perspectives of equilibrium throughput properties of continuous mono-T-semiflow Petri nets: firing rate and initial marking variations ⋮
A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models ⋮
Lyapunov Function Partial Differential Equations for Chemical Reaction Networks: Some Special Cases ⋮
Oscillations and bistability in a model of ERK regulation ⋮
Minimal trap spaces of logical models are maximal siphons of their Petri net encoding ⋮
A global convergence result for processive multisite phosphorylation systems ⋮
From science to management: using Bayesian networks to learn about \textit{Lyngbya}
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