Algebra and geometry in the study of enzymatic cascades
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Publication:3296189
DOI10.1007/978-3-030-21170-7_2zbMATH Open1436.13058OpenAlexW2997031807MaRDI QIDQ3296189FDOQ3296189
Authors: Alicia Dickenstein 
Publication date: 7 July 2020
Published in: Association for Women in Mathematics Series (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/978-3-030-21170-7_2
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Biochemistry, molecular biology (92C40) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25) Computational methods for problems pertaining to biology (92-08) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)
Cites Work
- The structure of MESSI biological systems
- Title not available (Why is that?)
- A Petri net approach to the study of persistence in chemical reaction networks
- Algebraic systems biology: a case study for the Wnt pathway
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- Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
- Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems
- Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates
- The rational parameterisation theorem for multisite post-translational modification systems
- Title not available (Why is that?)
- Descartes' rule of signs for polynomial systems supported on circuits
- Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry
- Laplacian dynamics on general graphs
- A proof of bistability for the dual futile cycle
- A global convergence result for processive multisite phosphorylation systems
- Sustained oscillations in the MAP kinase cascade
- On the number of steady states in a multiple futile cycle
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- Multistationarity in sequential distributed multisite phosphorylation networks
- Reachability, persistence, and constructive chemical reaction networks. III: A mathematical formalism for binary enzymatic networks and application to persistence
- An all-encompassing global convergence result for processive multisite phosphorylation systems
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- Multistationarity in the space of total concentrations for systems that admit a monomial parametrization
- Biochemical reaction networks: An invitation for algebraic geometers
- The multistationarity structure of networks with intermediates and a binomial core network
- A Polyhedral Method for Sparse Systems with Many Positive Solutions
- Multistationarity in Biochemical Networks: Results, Analysis, and Examples
- The inheritance of nondegenerate multistationarity in chemical reaction networks
- Emergence of oscillations in a mixed-mechanism phosphorylation system
- Which small reaction networks are multistationary?
- Inheritance of oscillation in chemical reaction networks
Cited In (7)
- Families of polynomials in the study of biochemical reaction networks
- An algebraic approach to signaling cascades with \(n\) layers
- Stieltjes integration and differential geometry: A model for enzyme recognition, discrimination, and catalysis
- Biochemical reaction networks: An invitation for algebraic geometers
- A stochastic analysis of particle systems with pairing
- The rational parameterisation theorem for multisite post-translational modification systems
- The structure of MESSI biological systems
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