Algebraic Models and Their Use in Systems Biology

DOI10.1007/978-3-642-40193-0_21zbMath1290.92011OpenAlexW2278521178MaRDI QIDQ4979491

Alan Veliz-Cuba, David Murrugarra, Franziska Hinkelmann, Reinhard C. Laubenbacher

Publication date: 23 June 2014

Published in: Discrete and Topological Models in Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-40193-0_21

Mathematics Subject Classification ID

Systems biology, networks (92C42)

Related Items (max. 100)

On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors ⋮ Multistate nested canalizing functions and their networks ⋮ Controllability and observability of Boolean networks arising from biology

Uses Software

• Macaulay2
• SNOOPY
• Polynome
• ADAM
• TIGRESS

Cites Work

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• Inferring biologically relevant models: nested canalyzing functions
• Boolean nested canalizing functions: a comprehensive analysis
• The number of multistate nested canalyzing functions
• Parameter estimation for Boolean models of biological networks
• The dynamics of conjunctive and disjunctive Boolean network models
• Stochastic and delayed stochastic models of gene expression and regulation
• Attractor analysis of asynchronous Boolean models of signal transduction networks
• The core control system of intracellular iron homeostasis: a mathematical model
• Regulatory patterns in molecular interaction networks
• Reduction of Boolean network models
• Fixed points and maximal independent sets in AND-OR networks
• On the relationship of steady states of continuous and discrete models arising from biology
• The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}
• A computational algebra approach to the reverse engineering of gene regulatory networks
• Robustness and state-space structure of Boolean gene regulatory models
• Noisy attractors and ergodic sets in models of gene regulatory networks
• An analysis of the Petri net based model of the human body iron homeostasis process
• Nested canalyzing, unate cascade, and polynomial functions
• Reverse-engineering of polynomial dynamical systems
• On the computation of fixed points in Boolean networks
• AND-NOT logic framework for steady state analysis of Boolean network models
• An Algebraic Approach to Reverse Engineering Finite Dynamical Systems Arising from Biology
• Applications and Theory of Petri Nets 2004

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