Noisy attractors and ergodic sets in models of gene regulatory networks

DOI10.1016/J.JTBI.2007.04.020MaRDI QIDQ2219778zbMATH OpenOpenAlexWikidataFDO

Authors André Silva Ribeiro, Stuart A. Kauffman

Publication date 21 January 2021

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2007.04.020

zbMATH Keywords

attractorgene regulatory networksBoolean networkscell type

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Cell biology (92C37)

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Cites work

• scientific article; zbMATH DE number 3340881 (Why is no real title available?)
• A generalized model of the repressilator
• A global stability criterion for simple control loops
• Oscillations and multiple steady states in a cyclic gene model with repression
• Statistical mechanics of complex networks
• Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models

Cited in

(15)

• Dynamical attraction in parallel network models
• Bifurcation analysis of a mathematical model for genetic regulatory network with time delays
• Dynamics of small genetic circuits subject to stochastic partitioning in cell division
• Tuning cell differentiation patterns and single cell dynamics by regulating proteins' functionalities in a toggle switch
• Variability of the distribution of differentiation pathway choices regulated by a multipotent delayed stochastic switch
• Stochastic and delayed stochastic models of gene expression and regulation
• Activity in Boolean networks
• Effects of codon sequence on the dynamics of genetic networks
• Attractor stability in nonuniform Boolean networks
• Dynamics of unperturbed and noisy generalized Boolean networks
• Type of noise defines global attractors in bistable molecular regulatory systems
• Attractors and transient in sequential dynamical systems
• On the dynamics of random Boolean networks subject to noise: attractors, ergodic sets and cell types
• Cyclic attractors of nonexpanding \(q\)-ary networks
• Algebraic Models and Their Use in Systems Biology

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